PhysioMap Editor

curate nodes & edges — validated by the same gates we deploy on ← back to viewer

Curator

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Node

Causal edge

Production

Constitutive

Modulation

Ratio

id *

label *

scale *

entity_iri (Uberon/GO/CL/CHEBI/PR)

quality_iri (PATO determinable)

bearer_entity_iri (cell/organ that bears a molecular quality)

local ontology lookup

exogenous (forcing/boundary input)

An edge means do(source) → Δtarget. Prefer core → new analyte (sink) so it can't perturb the diagnostic core.

source *

target *

sign *

context id (optional stable regime selector)

context label

context kind

causal_evidence * (interventional only)

mechanism

evidence * (citation / PMID / textbook anchor)

A typed process output or consumption relation. It is neither material constitution nor an authored causal influence.

source process/activity *

target pool/output *

sign *

production_evidence *

mechanism *

evidence *

Cross-scale constitutive (not causal): micro ▷ macro. Validated against ontology/partof.yaml.

micro (finer) *

macro (coarser) *

relation *

sign *

A gain: modulator scales the strength of an existing causal edge. Gated harder — needs interventional interaction evidence.

modulator *

influence_id * (exact modulated influence)

sign * (of d(gain)/d(modulator))

causal_evidence *

mechanism

evidence * (interaction evidence)

can_flip_sign (gain can cross zero)

A measurement identity ratio = numerator / denominator; this is quantitative definition, not constitution.

ratio/result *

numerator *

denominator *

mechanism / definition

evidence

Current contribution

OWL axiom preview

Validation

Add items, then click Validate. Every gate below is the same check we run before deployment — a contribution can only be submitted when all are green.