{
  "bundle": "rh04_63_rh04_bacillus_spizizenii_genoadjust_demo",
  "created": "2026-07-01",
  "sample_id": "rh04",
  "assembly_id": "63_rh04",
  "organism": "Bacillus spizizenii",
  "taxon_id": "96241",
  "ani_status": "CONFIRMED",
  "ani_confidence": "HIGH",
  "source": {
    "assembly_fasta": "/ibex/scratch/projects/c2014/EmptyQuarter_Data/processed/sequencing-results/rh_sequencing/rh04/assembly/63_rh04_assembly.fa",
    "pgap_annotation_dir": "/ibex/scratch/projects/c2014/EmptyQuarter_Data/cultures/assemblies/assemblies_tiannyu_2025/pgap_annotations/63_rh04"
  },
  "files": [
    {
      "name": "genome_63_rh04_assembly.fa.gz",
      "description": "Genome assembly FASTA"
    },
    {
      "name": "pgap_annot.gff.gz",
      "description": "PGAP GFF annotation used by the GenoAdjust demo"
    },
    {
      "name": "pgap_annot.faa.gz",
      "description": "PGAP protein FASTA"
    },
    {
      "name": "pgap_annot.fna.gz",
      "description": "PGAP nucleotide feature FASTA"
    },
    {
      "name": "ani-tax-report.txt",
      "description": "PGAP ANI taxonomy report"
    },
    {
      "name": "checkm.txt",
      "description": "CheckM quality summary"
    }
  ]
}