{ "release": "3.0.1", "requested_generator": "Claude Code --model sonnet", "resolved_models": [ "claude-sonnet-5-5" ], "reviewer": "Codex (automated review; not a claim of human curation)", "license": "https://creativecommons.org/licenses/by/4.0/", "definitions": [ { "iri": "https://rubalkhali.science/kb/RAK_0000001", "definition": "An object quality that characterises a sampling site or its condition in the Rub al-Khali dataset.", "review_note": "Axioms give only the parent 'object quality'; which site attributes count as site quality is not specified. Definition is deliberately generic.", "sonnet_draft": "An object quality that characterises a sampling site or its condition in the Rub al-Khali dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "site quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000002", "definition": "A site from which samples are collected or at which observations are made within the Rub al-Khali field study.", "review_note": "Only subclass of SIO 'site' is asserted; the definition of the site extent and any link to coordinates is not given in the axioms.", "sonnet_draft": "A site from which samples are collected or at which observations are made within the Rub al-Khali field study.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "sampling site" }, { "iri": "https://rubalkhali.science/kb/RAK_0000003", "definition": "An investigation consisting of a visit to a sampling site, during which field observations, measurements or sample collection may occur.", "review_note": "No restrictive axioms; relationship to expedition and sampling site is not axiomatised, so the 'during which' content is an assumption from the label.", "sonnet_draft": "An investigation consisting of a visit to a sampling site, during which field observations, measurements or sample collection may occur.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "site visit" }, { "iri": "https://rubalkhali.science/kb/RAK_0000004", "definition": "A data collection device of the Mitsubishi Pajero barometer type, used to record atmospheric pressure.", "review_note": "Axioms only give 'data collection device'. Purpose (atmospheric pressure) is inferred from the label; the model of barometer (vehicle-mounted) is unverified.", "sonnet_draft": "A data collection device of the Mitsubishi Pajero barometer type, used to record atmospheric pressure; the class describes devices of this type rather than one unique physical device.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Mitsubishi Pajero Barometer" }, { "iri": "https://rubalkhali.science/kb/RAK_0000005", "definition": "A data collection device of the Testo thermometer type, used to record temperature.", "review_note": "Only parent 'data collection device' is asserted. Temperature purpose is inferred from label; the measured medium (air, soil) is not specified.", "sonnet_draft": "A data collection device of the Testo thermometer type, used to record temperature; the class describes devices of this type rather than one unique physical device.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Testo Thermometer" }, { "iri": "https://rubalkhali.science/kb/RAK_0000006", "definition": "A measuring process whose aim is to determine a temperature.", "review_note": "No axioms link it to a device, value class or measured entity; the target of measurement (air, soil) is not stated.", "sonnet_draft": "A measuring process whose aim is to determine a temperature.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "temperature measuring" }, { "iri": "https://rubalkhali.science/kb/RAK_0000007", "definition": "A measuring process whose aim is to determine atmospheric pressure.", "review_note": "No axioms link it to a device or value class.", "sonnet_draft": "A measuring process whose aim is to determine atmospheric pressure.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "atmospheric pressure measuring" }, { "iri": "https://rubalkhali.science/kb/RAK_0000008", "definition": "A measuring process whose aim is to determine relative humidity.", "review_note": "No axioms link it to a device or value class.", "sonnet_draft": "A measuring process whose aim is to determine relative humidity.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "relative humidity measuring" }, { "iri": "https://rubalkhali.science/kb/RAK_0000009", "definition": "A measuring process that determines climate variables summarised over a year for a site or region.", "review_note": "Which variables are included and the data source (in situ vs. external) are not stated; inferred from sibling value classes (annual mean temperature, total precipitation, total rain).", "sonnet_draft": "A measuring process that determines climate variables summarised over a year for a site or region.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "annual climate measuring" }, { "iri": "https://rubalkhali.science/kb/RAK_0000010", "definition": "A measurement value that expresses a temperature determined by a measuring process.", "review_note": "Units are not specified in the axioms and none are asserted. Whether air or soil temperature is not stated.", "sonnet_draft": "A measurement value that expresses a temperature determined by a measuring process.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "temperature measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000011", "definition": "A measurement value that expresses an atmospheric pressure determined by a measuring process.", "review_note": "Units are not specified in the axioms and none are asserted.", "sonnet_draft": "A measurement value that expresses an atmospheric pressure determined by a measuring process.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "atmospheric pressure measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000012", "definition": "A measurement value that expresses a relative humidity determined by a measuring process.", "review_note": "Units and scale (e.g. percent vs. fraction) are not specified in the axioms and none are asserted.", "sonnet_draft": "A measurement value that expresses a relative humidity determined by a measuring process.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "relative humidity measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000013", "definition": "A measurement value that expresses the mean temperature over a year.", "review_note": "Averaging basis, source and units are not documented in the axioms.", "sonnet_draft": "A measurement value that expresses the mean temperature over a year.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "annual mean temperature value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000014", "definition": "A measurement value that expresses the total precipitation accumulated over a year.", "review_note": "Units and data source are not documented. Relationship to 'annual total rain value' (RAK_0000015) is not axiomatised; precipitation is broader than rain, but overlap is unspecified.", "sonnet_draft": "A measurement value that expresses the total precipitation accumulated over a year.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "annual total precipitation value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000015", "definition": "A measurement value that expresses the total rain accumulated over a year.", "review_note": "Units and data source not documented. Possible redundancy or overlap with annual total precipitation value; not resolved.", "sonnet_draft": "A measurement value that expresses the total rain accumulated over a year.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "annual total rain value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000016", "definition": "A collective of people who took part in the Rub al-Khali expedition.", "review_note": "Axioms provide only the parent 'collective'; membership and linkage to the expedition are not axiomatised.", "sonnet_draft": "A collective of people who took part in the Rub al-Khali expedition.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Rub al-Khali Expedition Team" }, { "iri": "https://rubalkhali.science/kb/RAK_0000017", "definition": "A function whose realisation is the measuring of a quantity or quality.", "review_note": "No restrictive axioms; bearer (likely a device) and the realising process are not stated, so this is inferred from the label.", "sonnet_draft": "A function whose realisation is the measuring of a quantity or quality.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "measuring function" }, { "iri": "https://rubalkhali.science/kb/RAK_0000018", "definition": "An investigation consisting of an organised field journey to the Rub al-Khali for the purpose of collecting samples and data.", "review_note": "Only parent 'investigation' is asserted. Relationship to site visit and the expedition team is not axiomatised.", "sonnet_draft": "An investigation consisting of an organised field journey to the Rub al-Khali for the purpose of collecting samples and data.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "expedition" }, { "iri": "https://rubalkhali.science/kb/RAK_0000019", "definition": "A person, as defined by the SIO class, in the context of the Rub al-Khali project, for instance a member of the expedition team.", "review_note": "Project class and parent share the label 'person'; this is potentially redundant with SIO person. No roles are axiomatised.", "sonnet_draft": "A person, as defined by the SIO class, in the context of the Rub al-Khali project, for instance a member of the expedition team.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "person" }, { "iri": "https://rubalkhali.science/kb/RAK_0000020", "definition": "A sample of soil taken from the surface of a sampling site.", "review_note": "No depth threshold or sampling protocol is given in the axioms; the boundary between surface and deep is not defined.", "sonnet_draft": "A sample of soil taken from the surface of a sampling site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "surface soil sample" }, { "iri": "https://rubalkhali.science/kb/RAK_0000021", "definition": "A sample of soil taken from below the surface layer at a sampling site.", "review_note": "No depth threshold or protocol given; the boundary with surface soil sample is undefined.", "sonnet_draft": "A sample of soil taken from below the surface layer at a sampling site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "deep soil sample" }, { "iri": "https://rubalkhali.science/kb/RAK_0000022", "definition": "A sample of soil adjacent to plant roots, collected as a rhizosphere sample.", "review_note": "Root-adjacent status does not establish plant growth promotion. The collection method and distance criterion are not documented.", "sonnet_draft": "A sample of soil adjacent to plant roots, collected as a rhizosphere sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "rhizosphere sample" }, { "iri": "https://rubalkhali.science/kb/RAK_0000023", "definition": "A sample consisting of plant material collected in the field.", "review_note": "Plant part, species and handling are not specified in the axioms.", "sonnet_draft": "A sample consisting of plant material collected in the field.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "plant matter sample" }, { "iri": "https://rubalkhali.science/kb/RAK_0000024", "definition": "A process in which a sample is taken from a site or material entity.", "review_note": "No axioms relate it to sample classes, sites or protocols; inferred from the label.", "sonnet_draft": "A process in which a sample is taken from a site or material entity.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "sampling process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000025", "definition": "A measuring process that determines elemental composition of a material using X-ray fluorescence (XRF).", "review_note": "Field vs. laboratory scope is not distinguished by axioms; see protocol classes RAK_0000027 and RAK_0000028. Instrument and calibration details are not given.", "sonnet_draft": "A measuring process that determines elemental composition of a material using X-ray fluorescence (XRF).", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "XRF measuring process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000026", "definition": "A data collection device of the X-ray fluorescence (XRF) type, used to obtain elemental composition readouts.", "review_note": "Only the parent is asserted; make, model, and whether it is handheld or benchtop are not specified.", "sonnet_draft": "A data collection device of the X-ray fluorescence (XRF) type, used to obtain elemental composition readouts; the class describes devices of this type rather than one unique physical device.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "XRF device" }, { "iri": "https://rubalkhali.science/kb/RAK_0000027", "definition": "An action specification describing the project's protocol for performing XRF measurement in the field.", "review_note": "The protocol steps, settings and instrument are not stated in the axioms, so none are asserted.", "sonnet_draft": "An action specification describing the project's protocol for performing XRF measurement in the field.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Field XRF protocol" }, { "iri": "https://rubalkhali.science/kb/RAK_0000028", "definition": "An action specification describing the project's protocol for performing XRF measurement in a laboratory.", "review_note": "The protocol steps, settings, sample preparation and instrument are not stated in the axioms, so none are asserted.", "sonnet_draft": "An action specification describing the project's protocol for performing XRF measurement in a laboratory.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Lab XRF protocol" }, { "iri": "https://rubalkhali.science/kb/RAK_0000029", "definition": "A concentration quality (PATO 'concentration of' and SIO concentration) of a chemical analyte within a material.", "review_note": "Two parents (PATO concentration of; SIO concentration) mix a PATO quality with an SIO class; possible modelling inconsistency. Units are not specified.", "sonnet_draft": "A concentration quality (PATO 'concentration of' and SIO concentration) of a chemical analyte within a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "chemical analyte concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000030", "definition": "A measurement value that expresses the determined concentration of a chemical analyte.", "review_note": "Units, normalisation and the measurement method are not given in the axioms.", "sonnet_draft": "A measurement value that expresses the determined concentration of a chemical analyte.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "analyte concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000031", "definition": "A material entity corresponding to the instrument-reported 'Light Elements' aggregate in XRF output, not a specific compound or defined chemical species.", "review_note": "The composition and membership of 'light elements' are undocumented and instrument-defined. A material entity parent may imply a physical mixture that is not established.", "sonnet_draft": "A material entity corresponding to the instrument-reported 'Light Elements' aggregate in XRF output, not a specific compound or defined chemical species.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Light Elements mixture" }, { "iri": "https://rubalkhali.science/kb/RAK_0000032", "definition": "A chemical analyte concentration of the instrument-reported Light Elements aggregate in a material.", "review_note": "Units are undocumented; this is not a validated percentage or a concentration of a specific compound.", "sonnet_draft": "A chemical analyte concentration of the instrument-reported Light Elements aggregate in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Light Elements concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000033", "definition": "A measurement value reported by the instrument for the Light Elements aggregate concentration.", "review_note": "Units undocumented; not a validated percentage. Value meaning depends on the instrument's own definition of light elements.", "sonnet_draft": "A measurement value reported by the instrument for the Light Elements aggregate concentration.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Light Elements concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000034", "definition": "A measuring process that determines climate variables summarised over a month for a site or region.", "review_note": "Variables included and data source are not stated; inferred from sibling monthly value classes.", "sonnet_draft": "A measuring process that determines climate variables summarised over a month for a site or region.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "monthly climate measuring" }, { "iri": "https://rubalkhali.science/kb/RAK_0000035", "definition": "A measurement value that expresses the mean temperature over a month.", "review_note": "Averaging basis, source and units are not documented.", "sonnet_draft": "A measurement value that expresses the mean temperature over a month.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "monthly mean temperature value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000036", "definition": "A measurement value that expresses the total precipitation accumulated over a month.", "review_note": "Units and data source not documented. Overlaps with monthly total rain value; relationship not axiomatised.", "sonnet_draft": "A measurement value that expresses the total precipitation accumulated over a month.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "monthly total precipitation value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000037", "definition": "A measurement value that expresses the total rain accumulated over a month.", "review_note": "Units and data source not documented. Possible redundancy with monthly total precipitation value.", "sonnet_draft": "A measurement value that expresses the total rain accumulated over a month.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "monthly total rain value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000038", "definition": "A measurement value that expresses the mean humidity over a month.", "review_note": "Label says 'humidity', not 'relative humidity'; whether it is relative humidity is not stated. Units and averaging basis undocumented.", "sonnet_draft": "A measurement value that expresses the mean humidity over a month.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "monthly mean humidity value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000040", "definition": "A double-stranded DNA material obtained by extraction from a sample.", "review_note": "Parent is 'double stranded DNA'; extraction source and the kit used are not axiomatised. Real extracts are a mixture, so the parent may be over-specific.", "sonnet_draft": "A double-stranded DNA material obtained by extraction from a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "DNA extract" }, { "iri": "https://rubalkhali.science/kb/RAK_0000041", "definition": "A measuring process that determines the concentration of DNA in a DNA extract.", "review_note": "Method and device are not axiomatised; the link to Nanodrop device is not asserted.", "sonnet_draft": "A measuring process that determines the concentration of DNA in a DNA extract.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "DNA concentration measurement process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000042", "definition": "A data collection device of the Nanodrop type, used to obtain readouts such as nucleic acid concentration.", "review_note": "Only the parent is asserted; use for DNA concentration is inferred from the project context, and the specific model is not specified.", "sonnet_draft": "A data collection device of the Nanodrop type, used to obtain readouts such as nucleic acid concentration; the class describes devices of this type rather than one unique physical device.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Nanodrop device" }, { "iri": "https://rubalkhali.science/kb/RAK_0000043", "definition": "A concentration quality of DNA in a material such as a DNA extract.", "review_note": "Parent is PATO 'concentration of'; the label says 'quality' but the term denotes a concentration quality, not a quality-control grade. Units are not specified.", "sonnet_draft": "A concentration quality of DNA in a material such as a DNA extract.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "DNA concentration quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000044", "definition": "A measurement value that expresses the determined concentration of DNA.", "review_note": "Units are not specified in axioms and none are asserted.", "sonnet_draft": "A measurement value that expresses the determined concentration of DNA.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "DNA concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000050", "definition": "A heterogeneous substance comprising reagents and materials supplied together for extracting DNA from samples.", "review_note": "Parent is 'heterogeneous substance'; a kit is arguably a collection of items, which may be a modelling mismatch.", "sonnet_draft": "A heterogeneous substance comprising reagents and materials supplied together for extracting DNA from samples.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "DNA extraction kit" }, { "iri": "https://rubalkhali.science/kb/RAK_0000051", "definition": "A DNA extraction kit of the PowerSoil DNA extraction type.", "review_note": "Vendor, version and protocol details are not stated in axioms. Distinction from the PowerSoil Pro kit is by label only.", "sonnet_draft": "A DNA extraction kit of the PowerSoil DNA extraction type.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "PowerSoil DNA Extraction Kit" }, { "iri": "https://rubalkhali.science/kb/RAK_0000052", "definition": "A DNA extraction kit of the PowerSoil Pro DNA extraction type.", "review_note": "Vendor, version and protocol details are not stated in axioms. Distinction from the PowerSoil kit is by label only.", "sonnet_draft": "A DNA extraction kit of the PowerSoil Pro DNA extraction type.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "PowerSoil Pro DNA Extraction Kit" }, { "iri": "https://rubalkhali.science/kb/RAK_0000060", "definition": "A DNA extract consisting of amplified 16S rRNA gene fragments prepared for sequencing.", "review_note": "Primers, target region and library chemistry are not axiomatised; subclass of DNA extract is as asserted.", "sonnet_draft": "A DNA extract consisting of amplified 16S rRNA gene fragments prepared for sequencing.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "16S Amplicon Library" }, { "iri": "https://rubalkhali.science/kb/RAK_0000061", "definition": "A deoxyribonucleic acid primer used in the forward direction to amplify a 16S rRNA gene region.", "review_note": "Sequence, target region and primer name are not stated in axioms.", "sonnet_draft": "A deoxyribonucleic acid primer used in the forward direction to amplify a 16S rRNA gene region.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Forward 16S Primer" }, { "iri": "https://rubalkhali.science/kb/RAK_0000062", "definition": "A deoxyribonucleic acid primer used in the reverse direction to amplify a 16S rRNA gene region.", "review_note": "Sequence, target region and primer name are not stated in axioms.", "sonnet_draft": "A deoxyribonucleic acid primer used in the reverse direction to amplify a 16S rRNA gene region.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Reverse 16S Primer" }, { "iri": "https://rubalkhali.science/kb/RAK_0000063", "definition": "A dataset of sequence reads and their quality scores in FASTQ format.", "review_note": "Sequencing platform, library and read layout are not stated. The FASTQ content is inferred from the label.", "sonnet_draft": "A dataset of sequence reads and their quality scores in FASTQ format.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "FASTQ Dataset" }, { "iri": "https://rubalkhali.science/kb/RAK_0000064", "definition": "A data item representing the inferred nucleotide sequence of a single DNA fragment produced by sequencing.", "review_note": "Read length, platform and quality values are not stated in axioms.", "sonnet_draft": "A data item representing the inferred nucleotide sequence of a single DNA fragment produced by sequencing.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sequence Read" }, { "iri": "https://rubalkhali.science/kb/RAK_0000065", "definition": "A process in which nucleic acid material is prepared into a library for sequencing.", "review_note": "Specific steps and reagents are not axiomatised; likely 16S amplicon library preparation but not asserted.", "sonnet_draft": "A process in which nucleic acid material is prepared into a library for sequencing.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "library preparation process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000066", "definition": "A process in which the nucleotide sequences of nucleic acid molecules in a library are determined.", "review_note": "Platform and chemistry are not stated in axioms.", "sonnet_draft": "A process in which the nucleotide sequences of nucleic acid molecules in a library are determined.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "sequencing process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000070", "definition": "A workflow specifying a sequence of computational steps for analysing biological data.", "review_note": "Specific tools and steps are not stated.", "sonnet_draft": "A workflow specifying a sequence of computational steps for analysing biological data.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "bioinformatic workflow" }, { "iri": "https://rubalkhali.science/kb/RAK_0000071", "definition": "A bioinformatic workflow for processing 16S rRNA amplicon sequence data.", "review_note": "Specific tools, parameters and outputs (e.g. taxon tables) are not stated in axioms.", "sonnet_draft": "A bioinformatic workflow for processing 16S rRNA amplicon sequence data.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "16S amplicon processing workflow" }, { "iri": "https://rubalkhali.science/kb/RAK_0000072", "definition": "A textual entity naming the quality of a taxon's abundance expressed relative to other taxa in a sample.", "review_note": "Parent is 'textual entity' rather than a PATO quality, despite the label 'quality'. Possible modelling inconsistency; normalisation basis is not stated.", "sonnet_draft": "A textual entity naming the quality of a taxon's abundance expressed relative to other taxa in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "taxon relative abundance quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000073", "definition": "A measurement value that expresses the abundance of a taxon relative to other taxa or to a total within a sample.", "review_note": "Numerical range (e.g. 0–1 or 0–100) and the denominator are not specified in the axioms.", "sonnet_draft": "A measurement value that expresses the abundance of a taxon relative to other taxa or to a total within a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "relative abundance measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000074", "definition": "A dataset of absolute abundance values for taxa across samples.", "review_note": "How absolute abundance was obtained (e.g. spike-ins, qPCR) is not documented. Whether values are counts or concentrations is unspecified.", "sonnet_draft": "A dataset of absolute abundance values for taxa across samples.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "taxon absolute abundance dataset" }, { "iri": "https://rubalkhali.science/kb/RAK_0000075", "definition": "A dataset of relative abundance values for taxa across samples.", "review_note": "Normalisation basis and numerical range are not documented.", "sonnet_draft": "A dataset of relative abundance values for taxa across samples.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "taxon relative abundance dataset" }, { "iri": "https://rubalkhali.science/kb/RAK_0000076", "definition": "A measurement value expressing a taxon abundance as a sequence read count in a sample.", "review_note": "Units, scale and derivation method are not specified in the axioms.", "sonnet_draft": "A measurement value that expresses the abundance of a taxon in absolute terms rather than relative to a total.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "absolute abundance measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000078", "definition": "A textual entity naming the quality of a taxon's abundance expressed in absolute terms.", "review_note": "Parent is 'textual entity' rather than a PATO quality; possible modelling inconsistency, parallel to taxon relative abundance quality.", "sonnet_draft": "A textual entity naming the quality of a taxon's abundance expressed in absolute terms.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "taxon absolute abundance quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000100", "definition": "A chemical analyte concentration quality of silicon (Si) in a material.", "review_note": "Units are not specified. Whether it refers to elemental Si as reported by XRF versus a compound such as silica is not stated.", "sonnet_draft": "A chemical analyte concentration quality of silicon (Si) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Si concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000101", "definition": "A chemical analyte concentration quality of iron (Fe) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of iron (Fe) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Fe concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000102", "definition": "A chemical analyte concentration quality of calcium (Ca) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of calcium (Ca) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ca concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000103", "definition": "A chemical analyte concentration quality of potassium (K) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of potassium (K) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "K concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000104", "definition": "A chemical analyte concentration quality of sulfur (S) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of sulfur (S) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "S concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000105", "definition": "A chemical analyte concentration quality of phosphorus (P) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of phosphorus (P) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "P concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000106", "definition": "A chemical analyte concentration quality of titanium (Ti) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of titanium (Ti) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ti concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000107", "definition": "A chemical analyte concentration quality of aluminium (Al) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of aluminium (Al) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Al concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000108", "definition": "A chemical analyte concentration quality of magnesium (Mg) in a material.", "review_note": "Units are not specified; chemical form is not stated.", "sonnet_draft": "A chemical analyte concentration quality of magnesium (Mg) in a material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Mg concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000109", "definition": "A chemical analyte concentration whose analyte is sodium (Na), quantifying how much sodium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no restriction ties the class to the Na analyte, a sample type, units, or method. Element-versus-ion form and units are undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is sodium (Na), quantifying how much sodium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Na concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000110", "definition": "A chemical analyte concentration whose analyte is chlorine (Cl), quantifying how much chlorine is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029. Whether Cl denotes elemental chlorine or chloride, and the units and method, are undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is chlorine (Cl), quantifying how much chlorine is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Cl concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000111", "definition": "A chemical analyte concentration whose analyte is manganese (Mn), quantifying how much manganese is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Distinct from MnO concentration (RAK_0000172).", "sonnet_draft": "A chemical analyte concentration whose analyte is manganese (Mn), quantifying how much manganese is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Mn concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000112", "definition": "A chemical analyte concentration whose analyte is strontium (Sr), quantifying how much strontium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Distinct from SrO concentration (RAK_0000178).", "sonnet_draft": "A chemical analyte concentration whose analyte is strontium (Sr), quantifying how much strontium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sr concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000113", "definition": "A chemical analyte concentration whose analyte is zirconium (Zr), quantifying how much zirconium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is zirconium (Zr), quantifying how much zirconium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Zr concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000114", "definition": "A chemical analyte concentration whose analyte is vanadium (V), quantifying how much vanadium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Distinct from V2O5 concentration (RAK_0000176).", "sonnet_draft": "A chemical analyte concentration whose analyte is vanadium (V), quantifying how much vanadium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "V concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000115", "definition": "A chemical analyte concentration whose analyte is chromium (Cr), quantifying how much chromium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Oxidation state not specified; distinct from Cr2O3 concentration (RAK_0000175).", "sonnet_draft": "A chemical analyte concentration whose analyte is chromium (Cr), quantifying how much chromium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Cr concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000116", "definition": "A chemical analyte concentration whose analyte is barium (Ba), quantifying how much barium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is barium (Ba), quantifying how much barium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ba concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000117", "definition": "A chemical analyte concentration whose analyte is lead (Pb), quantifying how much lead is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is lead (Pb), quantifying how much lead is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Pb concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000118", "definition": "A chemical analyte concentration whose analyte is zinc (Zn), quantifying how much zinc is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Distinct from ZnO concentration (RAK_0000177).", "sonnet_draft": "A chemical analyte concentration whose analyte is zinc (Zn), quantifying how much zinc is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Zn concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000119", "definition": "A chemical analyte concentration whose analyte is copper (Cu), quantifying how much copper is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is copper (Cu), quantifying how much copper is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Cu concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000120", "definition": "A chemical analyte concentration whose analyte is nickel (Ni), quantifying how much nickel is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is nickel (Ni), quantifying how much nickel is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ni concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000121", "definition": "A chemical analyte concentration whose analyte is cobalt (Co), quantifying how much cobalt is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is cobalt (Co), quantifying how much cobalt is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Co concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000122", "definition": "A chemical analyte concentration whose analyte is arsenic (As), quantifying how much arsenic is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Chemical speciation not specified.", "sonnet_draft": "A chemical analyte concentration whose analyte is arsenic (As), quantifying how much arsenic is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "As concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000123", "definition": "A chemical analyte concentration whose analyte is uranium (U), quantifying how much uranium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented. Isotopic composition not specified.", "sonnet_draft": "A chemical analyte concentration whose analyte is uranium (U), quantifying how much uranium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "U concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000124", "definition": "A chemical analyte concentration whose analyte is thorium (Th), quantifying how much thorium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is thorium (Th), quantifying how much thorium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Th concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000125", "definition": "A chemical analyte concentration whose analyte is rubidium (Rb), quantifying how much rubidium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is rubidium (Rb), quantifying how much rubidium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Rb concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000126", "definition": "A chemical analyte concentration whose analyte is yttrium (Y), quantifying how much yttrium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is yttrium (Y), quantifying how much yttrium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Y concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000127", "definition": "A chemical analyte concentration whose analyte is niobium (Nb), quantifying how much niobium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is niobium (Nb), quantifying how much niobium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Nb concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000128", "definition": "A chemical analyte concentration whose analyte is molybdenum (Mo), quantifying how much molybdenum is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is molybdenum (Mo), quantifying how much molybdenum is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Mo concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000129", "definition": "A chemical analyte concentration whose analyte is silver (Ag), quantifying how much silver is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is silver (Ag), quantifying how much silver is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ag concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000130", "definition": "A chemical analyte concentration whose analyte is cadmium (Cd), quantifying how much cadmium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is cadmium (Cd), quantifying how much cadmium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Cd concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000131", "definition": "A chemical analyte concentration whose analyte is tin (Sn), quantifying how much tin is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is tin (Sn), quantifying how much tin is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sn concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000132", "definition": "A chemical analyte concentration whose analyte is antimony (Sb), quantifying how much antimony is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is antimony (Sb), quantifying how much antimony is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sb concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000133", "definition": "A chemical analyte concentration whose analyte is iodine (I), quantifying how much iodine is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029. Whether I denotes elemental iodine or iodide/iodate, and the units and method, are undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is iodine (I), quantifying how much iodine is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "I concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000134", "definition": "A chemical analyte concentration whose analyte is caesium (Cs), quantifying how much caesium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is caesium (Cs), quantifying how much caesium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Cs concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000135", "definition": "A chemical analyte concentration whose analyte is lanthanum (La), quantifying how much lanthanum is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is lanthanum (La), quantifying how much lanthanum is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "La concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000136", "definition": "A chemical analyte concentration whose analyte is cerium (Ce), quantifying how much cerium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is cerium (Ce), quantifying how much cerium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ce concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000137", "definition": "A chemical analyte concentration whose analyte is praseodymium (Pr), quantifying how much praseodymium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is praseodymium (Pr), quantifying how much praseodymium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Pr concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000138", "definition": "A chemical analyte concentration whose analyte is neodymium (Nd), quantifying how much neodymium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is neodymium (Nd), quantifying how much neodymium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Nd concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000139", "definition": "A chemical analyte concentration whose analyte is samarium (Sm), quantifying how much samarium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is samarium (Sm), quantifying how much samarium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sm concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000140", "definition": "A chemical analyte concentration whose analyte is europium (Eu), quantifying how much europium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is europium (Eu), quantifying how much europium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Eu concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000141", "definition": "A chemical analyte concentration whose analyte is gadolinium (Gd), quantifying how much gadolinium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is gadolinium (Gd), quantifying how much gadolinium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Gd concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000142", "definition": "A chemical analyte concentration whose analyte is terbium (Tb), quantifying how much terbium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is terbium (Tb), quantifying how much terbium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Tb concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000143", "definition": "A chemical analyte concentration whose analyte is dysprosium (Dy), quantifying how much dysprosium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is dysprosium (Dy), quantifying how much dysprosium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Dy concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000144", "definition": "A chemical analyte concentration whose analyte is holmium (Ho), quantifying how much holmium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is holmium (Ho), quantifying how much holmium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ho concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000145", "definition": "A chemical analyte concentration whose analyte is erbium (Er), quantifying how much erbium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is erbium (Er), quantifying how much erbium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Er concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000146", "definition": "A chemical analyte concentration whose analyte is thulium (Tm), quantifying how much thulium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is thulium (Tm), quantifying how much thulium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Tm concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000147", "definition": "A chemical analyte concentration whose analyte is ytterbium (Yb), quantifying how much ytterbium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is ytterbium (Yb), quantifying how much ytterbium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Yb concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000148", "definition": "A chemical analyte concentration whose analyte is lutetium (Lu), quantifying how much lutetium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is lutetium (Lu), quantifying how much lutetium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Lu concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000149", "definition": "A chemical analyte concentration whose analyte is hafnium (Hf), quantifying how much hafnium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is hafnium (Hf), quantifying how much hafnium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Hf concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000150", "definition": "A chemical analyte concentration whose analyte is tantalum (Ta), quantifying how much tantalum is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is tantalum (Ta), quantifying how much tantalum is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ta concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000151", "definition": "A chemical analyte concentration whose analyte is tungsten (W), quantifying how much tungsten is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is tungsten (W), quantifying how much tungsten is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "W concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000152", "definition": "A chemical analyte concentration whose analyte is rhenium (Re), quantifying how much rhenium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is rhenium (Re), quantifying how much rhenium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Re concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000153", "definition": "A chemical analyte concentration whose analyte is osmium (Os), quantifying how much osmium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is osmium (Os), quantifying how much osmium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Os concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000154", "definition": "A chemical analyte concentration whose analyte is iridium (Ir), quantifying how much iridium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is iridium (Ir), quantifying how much iridium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ir concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000155", "definition": "A chemical analyte concentration whose analyte is platinum (Pt), quantifying how much platinum is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is platinum (Pt), quantifying how much platinum is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Pt concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000156", "definition": "A chemical analyte concentration whose analyte is gold (Au), quantifying how much gold is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is gold (Au), quantifying how much gold is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Au concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000157", "definition": "A chemical analyte concentration whose analyte is mercury (Hg), quantifying how much mercury is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is mercury (Hg), quantifying how much mercury is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Hg concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000158", "definition": "A chemical analyte concentration whose analyte is bismuth (Bi), quantifying how much bismuth is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is bismuth (Bi), quantifying how much bismuth is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Bi concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000159", "definition": "A chemical analyte concentration whose analyte is scandium (Sc), quantifying how much scandium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is scandium (Sc), quantifying how much scandium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sc concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000160", "definition": "A chemical analyte concentration whose analyte is bromine (Br), quantifying how much bromine is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029. Whether Br denotes elemental bromine or bromide, and the units and method, are undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is bromine (Br), quantifying how much bromine is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Br concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000161", "definition": "A chemical analyte concentration whose analyte is gallium (Ga), quantifying how much gallium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is gallium (Ga), quantifying how much gallium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ga concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000162", "definition": "A chemical analyte concentration whose analyte is selenium (Se), quantifying how much selenium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is selenium (Se), quantifying how much selenium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Se concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000163", "definition": "A chemical analyte concentration whose analyte is germanium (Ge), quantifying how much germanium is present in a sample.", "review_note": "Only axiom is subClassOf RAK_0000029; no analyte restriction, units, or method documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is germanium (Ge), quantifying how much germanium is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ge concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000164", "definition": "A chemical analyte concentration reported on a SiO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Unclear whether values are oxide-form results or oxide-equivalent reporting of elemental silicon; units and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is silicon dioxide (SiO2), quantifying how much SiO2 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "SiO2 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000165", "definition": "A chemical analyte concentration reported on a Fe2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Unclear whether this is total iron expressed as Fe2O3 or a specific iron phase; units and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is iron(III) oxide (Fe2O3), quantifying how much Fe2O3 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Fe2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000166", "definition": "A chemical analyte concentration reported on a Al2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is aluminium oxide (Al2O3), quantifying how much Al2O3 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Al2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000167", "definition": "A chemical analyte concentration reported on a CaO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting (e.g. carbonate-bound calcium), units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is calcium oxide (CaO), quantifying how much CaO is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CaO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000168", "definition": "A chemical analyte concentration reported on a MgO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is magnesium oxide (MgO), quantifying how much MgO is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "MgO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000169", "definition": "A chemical analyte concentration reported on a K2O oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is potassium oxide (K2O), quantifying how much K2O is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "K2O concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000170", "definition": "A chemical analyte concentration reported on a Na2O oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented. Distinct from Na concentration (RAK_0000109).", "sonnet_draft": "A chemical analyte concentration whose analyte is sodium oxide (Na2O), quantifying how much Na2O is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Na2O concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000171", "definition": "A chemical analyte concentration reported on a TiO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is titanium dioxide (TiO2), quantifying how much TiO2 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "TiO2 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000172", "definition": "A chemical analyte concentration reported on a MnO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented. Distinct from Mn concentration (RAK_0000111).", "sonnet_draft": "A chemical analyte concentration whose analyte is manganese(II) oxide (MnO), quantifying how much MnO is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "MnO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000173", "definition": "A chemical analyte concentration reported on a P2O5 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting (e.g. phosphate), units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is phosphorus pentoxide (P2O5), quantifying how much P2O5 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "P2O5 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000174", "definition": "A chemical analyte concentration reported on a SO3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting (e.g. sulfate), units, and method undocumented.", "sonnet_draft": "A chemical analyte concentration whose analyte is sulfur trioxide (SO3), quantifying how much SO3 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "SO3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000175", "definition": "A chemical analyte concentration reported on a Cr2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented. Distinct from Cr concentration (RAK_0000115).", "sonnet_draft": "A chemical analyte concentration whose analyte is chromium(III) oxide (Cr2O3), quantifying how much Cr2O3 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cr2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000176", "definition": "A chemical analyte concentration reported on a V2O5 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented. Distinct from V concentration (RAK_0000114).", "sonnet_draft": "A chemical analyte concentration whose analyte is vanadium pentoxide (V2O5), quantifying how much V2O5 is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "V2O5 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000177", "definition": "A chemical analyte concentration reported on a ZnO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented. Distinct from Zn concentration (RAK_0000118).", "sonnet_draft": "A chemical analyte concentration whose analyte is zinc oxide (ZnO), quantifying how much ZnO is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "ZnO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000178", "definition": "A chemical analyte concentration reported on a SrO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only axiom is subClassOf RAK_0000029. Oxide-form versus oxide-equivalent reporting, units, and method undocumented. Distinct from Sr concentration (RAK_0000112).", "sonnet_draft": "A chemical analyte concentration whose analyte is strontium oxide (SrO), quantifying how much SrO is present in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "SrO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000179", "definition": "A chemical analyte concentration reported on a ZrO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Axioms only give subclass of chemical analyte concentration; units, and whether the oxide form is a reporting convention of the XRF output rather than the true chemical species, are not documented.", "sonnet_draft": "A chemical analyte concentration whose analyte is zirconium dioxide (ZrO2), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "ZrO2 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000180", "definition": "A chemical analyte concentration reported on a BaO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is barium oxide (BaO), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "BaO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000181", "definition": "A chemical analyte concentration reported on a La2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is lanthanum(III) oxide (La2O3), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "La2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000182", "definition": "A chemical analyte concentration reported on a CeO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is cerium dioxide (CeO2), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CeO2 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000183", "definition": "A chemical analyte concentration reported on a PrO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; PrO2 stoichiometry (versus the more common Pr6O11 or Pr2O3) may be a reporting convention and should be confirmed.", "sonnet_draft": "A chemical analyte concentration whose analyte is praseodymium dioxide (PrO2), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "PrO2 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000184", "definition": "A chemical analyte concentration reported on a Nd2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is neodymium(III) oxide (Nd2O3), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Nd2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000185", "definition": "A chemical analyte concentration reported on a Sm2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is samarium(III) oxide (Sm2O3), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sm2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000186", "definition": "A chemical analyte concentration reported on a CuO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is copper(II) oxide (CuO), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CuO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000187", "definition": "A chemical analyte concentration reported on a NiO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is nickel(II) oxide (NiO), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "NiO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000188", "definition": "A chemical analyte concentration reported on a CoO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is cobalt(II) oxide (CoO), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CoO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000189", "definition": "A chemical analyte concentration reported on a PbO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is lead(II) oxide (PbO), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "PbO concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000190", "definition": "A chemical analyte concentration reported on a Sc2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is scandium(III) oxide (Sc2O3), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sc2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000191", "definition": "A chemical analyte concentration reported on a Ga2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "No units or restrictions in axioms; oxide form may be a reporting convention rather than the actual chemical species.", "sonnet_draft": "A chemical analyte concentration whose analyte is gallium(III) oxide (Ga2O3), as an oxide-form concentration reported for a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ga2O3 concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_0000200", "definition": "A process that performs quality control on sequencing data or sequencing runs, producing quality metrics such as read counts, GC content, duplicate rate and read length.", "review_note": "Axioms only state subclass of process; the specific QC tool, thresholds and outputs are not documented, and the link to the sequence quality classes is inferred from labels.", "sonnet_draft": "A process that performs quality control on sequencing data or sequencing runs, producing quality metrics such as read counts, GC content, duplicate rate and read length.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Sequencing QC Process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000201", "definition": "An amount quality of a sequencing dataset whose magnitude is the number of sequences it contains.", "review_note": "No axiom links this quality to its bearer or value class; the bearer and the pairing with 'sequence count value' are inferred from labels.", "sonnet_draft": "An amount quality of a sequencing dataset or read set that is borne by the number of sequences it contains and is quantified by a sequence count value.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "sequence count quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000202", "definition": "A sequence count quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label; assumes paired-end data.", "sonnet_draft": "A sequence count quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward sequence count quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000203", "definition": "A sequence count quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label; assumes paired-end data.", "sonnet_draft": "A sequence count quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse sequence count quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000204", "definition": "A base composition quality of a set of sequence reads that is the proportion of guanine and cytosine bases.", "review_note": "Parent PATO concentration-of is a loose fit for a base fraction; whether the value is a fraction or percentage is undocumented, and the parent is a quality while a sibling value class uses SIO concentration.", "sonnet_draft": "A quality, subclass of PATO 'concentration of', that is the proportion of guanine and cytosine bases in a set of sequence reads.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "GC content quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000205", "definition": "A GC content quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A GC content quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward GC content quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000206", "definition": "A GC content quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A GC content quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse GC content quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000207", "definition": "A ratio quality of a sequencing read set that is the proportion of reads identified as duplicates of other reads.", "review_note": "Duplicate definition (exact, optical, tool-specific) and whether expressed as fraction or percentage are not documented; the meaning is inferred from the label.", "sonnet_draft": "A ratio quality of a sequencing read set that is the proportion of reads identified as duplicates of other reads.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "duplicate rate quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000208", "definition": "A duplicate rate quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A duplicate rate quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward duplicate rate quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000209", "definition": "A duplicate rate quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A duplicate rate quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse duplicate rate quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000210", "definition": "A length quality of sequencing reads, borne by a read or read set and quantified by a read length value.", "review_note": "Unclear whether it describes individual reads, mean, or other summary of read length; no units given.", "sonnet_draft": "A length quality of sequencing reads, borne by a read or read set and quantified by a read length value.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "read length quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000211", "definition": "A read length quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A read length quality that pertains to the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward read length quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000212", "definition": "A read length quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A read length quality that pertains to the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse read length quality" }, { "iri": "https://rubalkhali.science/kb/RAK_0000213", "definition": "A count that records the number of sequences in a sequencing dataset or read set, serving as the value for a sequence count quality.", "review_note": "Link to the quality class is inferred from labels, not axiomatized.", "sonnet_draft": "A count that records the number of sequences in a sequencing dataset or read set, serving as the value for a sequence count quality.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "sequence count value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000214", "definition": "A sequence count value giving the number of forward reads in a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A sequence count value giving the number of forward reads in a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward sequence count value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000215", "definition": "A sequence count value giving the number of reverse reads in a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A sequence count value giving the number of reverse reads in a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse sequence count value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000216", "definition": "A concentration value expressing the GC content of a set of sequence reads, i.e. the proportion of G and C bases.", "review_note": "Parent is SIO concentration; scale (fraction vs percent) and unit are not specified, so none is asserted.", "sonnet_draft": "A concentration value expressing the GC content of a set of sequence reads, i.e. the proportion of G and C bases.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "GC content value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000217", "definition": "A GC content value for the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A GC content value for the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward GC content value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000218", "definition": "A GC content value for the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A GC content value for the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse GC content value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000219", "definition": "A quantity expressing the rate or proportion of duplicate reads in a read set, serving as the value for a duplicate rate quality.", "review_note": "Parent is generic SIO quantity while the quality parent is a ratio; scale (fraction vs percent) and duplicate definition are not documented.", "sonnet_draft": "A quantity expressing the rate or proportion of duplicate reads in a read set, serving as the value for a duplicate rate quality.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "duplicate rate value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000220", "definition": "A duplicate rate value for the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A duplicate rate value for the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward duplicate rate value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000221", "definition": "A duplicate rate value for the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A duplicate rate value for the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse duplicate rate value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000222", "definition": "A length value that records the length of sequencing reads, serving as the value for a read length quality.", "review_note": "Unit (e.g. bases) and summary statistic are not specified, so none is asserted.", "sonnet_draft": "A length value that records the length of sequencing reads, serving as the value for a read length quality.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "read length value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000223", "definition": "A read length value for the forward reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A read length value for the forward reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "forward read length value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000224", "definition": "A read length value for the reverse reads of a paired-end sequencing dataset.", "review_note": "Forward/reverse distinction is not axiomatized beyond the label.", "sonnet_draft": "A read length value for the reverse reads of a paired-end sequencing dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "reverse read length value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000251", "definition": "A laboratory XRF protocol defined for the analysis of surface soil samples in this project.", "review_note": "Surface depth range and protocol parameters are not given in the axioms; scope is taken from the label only.", "sonnet_draft": "A laboratory XRF protocol, a specialization of Lab XRF protocol, defined for the analysis of surface soil samples in this project.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "XRF Lab Protocol (Surface Soil)" }, { "iri": "https://rubalkhali.science/kb/RAK_0000252", "definition": "A laboratory XRF protocol defined for the analysis of deep soil samples in this project.", "review_note": "Deep depth range and protocol parameters are not given in the axioms; scope is taken from the label only.", "sonnet_draft": "A laboratory XRF protocol, a specialization of Lab XRF protocol, defined for the analysis of deep soil samples in this project.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "XRF Lab Protocol (Deep Soil)" }, { "iri": "https://rubalkhali.science/kb/RAK_0000253", "definition": "A laboratory XRF protocol defined for the analysis of rhizosphere soil samples in this project.", "review_note": "Rhizosphere sampling criteria and protocol parameters are not given in the axioms; scope is taken from the label only. Label does not imply plant growth promotion.", "sonnet_draft": "A laboratory XRF protocol, a specialization of Lab XRF protocol, defined for the analysis of rhizosphere soil samples in this project.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "XRF Lab Protocol (Rhizosphere Soil)" }, { "iri": "https://rubalkhali.science/kb/RAK_0000300", "definition": "A material entity used in a laboratory workflow as a control, whose expected behaviour serves as a reference for assessing processing or analysis.", "review_note": "Only a subclass of material entity is axiomatized; the control function is carried by laboratory control role, but no axiom links them.", "sonnet_draft": "A material entity used in a laboratory workflow as a control, whose expected behaviour serves as a reference for assessing processing or analysis.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "laboratory control material" }, { "iri": "https://rubalkhali.science/kb/RAK_0000301", "definition": "A laboratory control material that is also a sample, consisting of a mock microbial community of defined composition used as a reference in microbiome assays.", "review_note": "Definition of 'defined composition' is inferred from the label; composition is intended to be described by control composition specification but no axiom states this.", "sonnet_draft": "A laboratory control material that is also a sample, consisting of a mock microbial community of defined composition used as a reference in microbiome assays.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "mock-community control material" }, { "iri": "https://rubalkhali.science/kb/RAK_0000302", "definition": "A laboratory control material intended to contain no sample biological material, processed alongside samples to detect contamination.", "review_note": "Blank type (extraction vs PCR) is not specified at this level; contamination purpose is inferred from the label.", "sonnet_draft": "A laboratory control material intended to contain no sample biological material, processed alongside samples to detect contamination.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "blank control material" }, { "iri": "https://rubalkhali.science/kb/RAK_0000303", "definition": "A role borne by a material entity by virtue of being used as a control in laboratory processing or analysis.", "review_note": "No axiom links the role to bearer or process classes.", "sonnet_draft": "A role borne by a material entity by virtue of being used as a control in laboratory processing or analysis.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "laboratory control role" }, { "iri": "https://rubalkhali.science/kb/RAK_0000304", "definition": "A laboratory control role borne by material expected to yield a known positive microbial signal.", "review_note": "Positive-control expectation is inferred from the label; disjointness with the negative role is the only axiom beyond the parent.", "sonnet_draft": "A laboratory control role borne by material expected to yield a known positive microbial signal, and disjoint from negative microbiome control role.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "positive microbiome control role" }, { "iri": "https://rubalkhali.science/kb/RAK_0000305", "definition": "A laboratory control role borne by material expected to yield no sample-derived microbial signal, used to detect contamination.", "review_note": "Disjointness with the positive role is asserted only from the positive side; the negative class carries no reciprocal axiom (logically equivalent, but inconsistent in asserted form).", "sonnet_draft": "A laboratory control role borne by material expected to yield no sample-derived microbial signal, used to detect contamination.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained. Sonnet concern about reciprocal disjointness rejected: owl:disjointWith is symmetric.", "label": "negative microbiome control role" }, { "iri": "https://rubalkhali.science/kb/RAK_0000306", "definition": "A negative microbiome control role borne by a blank taken through the DNA extraction step.", "review_note": "Disjointness is asserted only on this side; the PCR blank class lacks the reciprocal axiom.", "sonnet_draft": "A negative microbiome control role borne by a blank taken through the DNA extraction step, and disjoint from PCR blank role.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised. Sonnet concern about reciprocal disjointness rejected: owl:disjointWith is symmetric.", "label": "extraction blank role" }, { "iri": "https://rubalkhali.science/kb/RAK_0000307", "definition": "A negative microbiome control role borne by a blank included in the PCR amplification step.", "review_note": "No reciprocal disjointness axiom with extraction blank role is asserted on this class.", "sonnet_draft": "A negative microbiome control role borne by a blank included in the PCR amplification step, distinct from extraction blank role.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised. Sonnet concern about reciprocal disjointness rejected: owl:disjointWith is symmetric.", "label": "PCR blank role" }, { "iri": "https://rubalkhali.science/kb/RAK_0000308", "definition": "A process grouping a set of laboratory samples that are handled together in one run of a laboratory step.", "review_note": "Batch membership and step are not axiomatized; a batch is modelled as a process, not a collection of samples.", "sonnet_draft": "A process grouping a set of laboratory samples that are handled together in one run of a laboratory step.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "laboratory processing batch" }, { "iri": "https://rubalkhali.science/kb/RAK_0000309", "definition": "A process and experiment in which DNA is extracted from a sample.", "review_note": "Method, kit, input material and output are not specified in the axioms.", "sonnet_draft": "A process and experiment in which DNA is extracted from a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "DNA extraction process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000310", "definition": "A laboratory processing batch in which a group of samples undergo PCR together.", "review_note": "Relationship to amplicon PCR process is not axiomatized.", "sonnet_draft": "A laboratory processing batch in which a group of samples undergo PCR together.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "PCR batch" }, { "iri": "https://rubalkhali.science/kb/RAK_0000311", "definition": "A process and experiment in which a target marker region is amplified by polymerase chain reaction to produce amplicons.", "review_note": "Target region, primers and cycling conditions are not specified in the axioms.", "sonnet_draft": "A process and experiment in which a target marker region is amplified by polymerase chain reaction to produce amplicons.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "amplicon PCR process" }, { "iri": "https://rubalkhali.science/kb/RAK_0000312", "definition": "A process in which control material is sequenced to assess the performance of a sequencing workflow.", "review_note": "Only subclass of process is axiomatized; the link to control materials and sequencing platform is inferred from the label.", "sonnet_draft": "A process in which control material is sequenced to assess the performance of a sequencing workflow.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control sequencing assay" }, { "iri": "https://rubalkhali.science/kb/RAK_0000313", "definition": "A statement recording information asserted about a laboratory control in the project metadata.", "review_note": "Scope of 'control metadata' is inferred from the label; no axioms define the asserted content.", "sonnet_draft": "A statement recording information asserted about a laboratory control in the project metadata.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control metadata assertion" }, { "iri": "https://rubalkhali.science/kb/RAK_0000314", "definition": "A status descriptor indicating the state of a control-related metadata item.", "review_note": "Possible status values and the subject of the status are not given.", "sonnet_draft": "A status descriptor indicating the state of a control-related metadata item.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control metadata status" }, { "iri": "https://rubalkhali.science/kb/RAK_0000315", "definition": "An informational quality expressing the degree of confidence in an assertion about a control.", "review_note": "No scale or levels are documented; relationship to control metadata assertion is inferred.", "sonnet_draft": "An informational quality expressing the degree of confidence in an assertion about a control.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control assertion confidence" }, { "iri": "https://rubalkhali.science/kb/RAK_0000316", "definition": "A functional specification describing the intended composition of a control, such as the components it is designed to contain.", "review_note": "Parent functional specification is a loose fit for a composition record; format and content are not documented.", "sonnet_draft": "A functional specification describing the intended composition of a control, such as the components it is designed to contain.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control composition specification" }, { "iri": "https://rubalkhali.science/kb/RAK_0000317", "definition": "A control metadata assertion stating that a particular taxon is expected to be present in a control, such as a mock community.", "review_note": "Whether expected abundance is included is not documented.", "sonnet_draft": "A control metadata assertion stating that a particular taxon is expected to be present in a control, such as a mock community.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "expected-taxon assertion" }, { "iri": "https://rubalkhali.science/kb/RAK_0000318", "definition": "A FASTQ dataset derived from sequencing of a laboratory control rather than an environmental sample.", "review_note": "No axiom restricts derivation to control material; scope is inferred from the label.", "sonnet_draft": "A FASTQ dataset derived from sequencing of a laboratory control rather than an environmental sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control-derived FASTQ dataset" }, { "iri": "https://rubalkhali.science/kb/RAK_0000319", "definition": "A statement recording how a control metadata field or value was handled or resolved in the project metadata.", "review_note": "Meaning of 'disposition' is inferred from its subclasses; no axioms define it further.", "sonnet_draft": "A statement recording how a control metadata field or value was handled or resolved in the project metadata.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control metadata disposition" }, { "iri": "https://rubalkhali.science/kb/RAK_0000320", "definition": "A control metadata disposition stating that a control metadata item remains unresolved.", "review_note": "Not axiomatically disjoint from inapplicable control metadata disposition; what resolution would require is not documented.", "sonnet_draft": "A control metadata disposition stating that a control metadata item remains unresolved.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "unresolved control metadata disposition" }, { "iri": "https://rubalkhali.science/kb/RAK_0000321", "definition": "A control metadata disposition stating that a control metadata item does not apply to the control concerned.", "review_note": "Not axiomatically disjoint from unresolved control metadata disposition.", "sonnet_draft": "A control metadata disposition stating that a control metadata item does not apply to the control concerned.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "inapplicable control metadata disposition" }, { "iri": "https://rubalkhali.science/kb/RAK_0000322", "definition": "A description that characterizes a field of control metadata, such as its name or meaning.", "review_note": "Content of descriptor not axiomatized; inferred from label.", "sonnet_draft": "A description that characterizes a field of control metadata, such as its name or meaning.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "control metadata field descriptor" }, { "iri": "https://rubalkhali.science/kb/RAK_0000323", "definition": "A description that characterizes the relation asserted between entities in a metadata assertion.", "review_note": "Which assertions it applies to and the descriptor content are not axiomatized; inferred from label.", "sonnet_draft": "A description that characterizes the relation asserted between entities in a metadata assertion.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "asserted-relation descriptor" }, { "iri": "https://rubalkhali.science/kb/RAK_0000500", "definition": "An analyte concentration measurement value reporting the concentration of silicon (Si) in a sample.", "review_note": "Units, element versus oxide form, and measurement method are not given in the axioms.", "sonnet_draft": "An analyte concentration measurement value reporting the concentration of silicon (Si) in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Si concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000501", "definition": "An analyte concentration measurement value reporting the concentration of iron (Fe) in a sample.", "review_note": "Units, element versus oxide form, and measurement method are not given in the axioms.", "sonnet_draft": "An analyte concentration measurement value reporting the concentration of iron (Fe) in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Fe concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000502", "definition": "An analyte concentration measurement value reporting the concentration of calcium (Ca) in a sample.", "review_note": "Units, element versus oxide form, and measurement method are not given in the axioms.", "sonnet_draft": "An analyte concentration measurement value reporting the concentration of calcium (Ca) in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "Ca concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000503", "definition": "An analyte concentration measurement value reporting the concentration of potassium (K) in a sample.", "review_note": "Units, element versus oxide form, and measurement method are not given in the axioms.", "sonnet_draft": "An analyte concentration measurement value reporting the concentration of potassium (K) in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "K concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000504", "definition": "An analyte concentration measurement value reporting the concentration of sulfur (S) in a sample.", "review_note": "Units, element versus oxide form, and measurement method are not given in the axioms.", "sonnet_draft": "An analyte concentration measurement value reporting the concentration of sulfur (S) in a sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "S concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000505", "definition": "An analyte concentration measurement value whose analyte is phosphorus (P), expressing the concentration of phosphorus reported for a measured sample.", "review_note": "Only a subclass axiom to analyte concentration measurement value is supplied; the analyte link, unit, matrix and method are not axiomatized. Whether this is total elemental P or a specific P form is not stated.", "sonnet_draft": "An analyte concentration measurement value whose analyte is phosphorus (P), expressing the concentration of phosphorus reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "P concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000506", "definition": "An analyte concentration measurement value whose analyte is titanium (Ti), expressing the concentration of titanium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Distinct from TiO2 concentration measurement value; relationship between the two is not stated.", "sonnet_draft": "An analyte concentration measurement value whose analyte is titanium (Ti), expressing the concentration of titanium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ti concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000507", "definition": "An analyte concentration measurement value whose analyte is aluminium (Al), expressing the concentration of aluminium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Distinct from Al2O3 concentration measurement value; relationship not stated.", "sonnet_draft": "An analyte concentration measurement value whose analyte is aluminium (Al), expressing the concentration of aluminium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Al concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000508", "definition": "An analyte concentration measurement value whose analyte is magnesium (Mg), expressing the concentration of magnesium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Distinct from MgO concentration measurement value; relationship not stated.", "sonnet_draft": "An analyte concentration measurement value whose analyte is magnesium (Mg), expressing the concentration of magnesium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Mg concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000509", "definition": "An analyte concentration measurement value whose analyte is sodium (Na), expressing the concentration of sodium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Distinct from Na2O concentration measurement value; relationship not stated.", "sonnet_draft": "An analyte concentration measurement value whose analyte is sodium (Na), expressing the concentration of sodium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Na concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000510", "definition": "An analyte concentration measurement value whose analyte is chlorine (Cl), expressing the concentration of chlorine reported for a measured sample.", "review_note": "Only a subclass axiom is supplied. The label does not state whether Cl denotes total chlorine or chloride; the chemical form is unresolved.", "sonnet_draft": "An analyte concentration measurement value whose analyte is chlorine (Cl), expressing the concentration of chlorine reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cl concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000511", "definition": "An analyte concentration measurement value whose analyte is manganese (Mn), expressing the concentration of manganese reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Distinct from MnO concentration measurement value; relationship not stated.", "sonnet_draft": "An analyte concentration measurement value whose analyte is manganese (Mn), expressing the concentration of manganese reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Mn concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000512", "definition": "An analyte concentration measurement value whose analyte is strontium (Sr), expressing the concentration of strontium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is strontium (Sr), expressing the concentration of strontium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sr concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000513", "definition": "An analyte concentration measurement value whose analyte is zirconium (Zr), expressing the concentration of zirconium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is zirconium (Zr), expressing the concentration of zirconium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Zr concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000514", "definition": "An analyte concentration measurement value whose analyte is vanadium (V), expressing the concentration of vanadium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is vanadium (V), expressing the concentration of vanadium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "V concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000515", "definition": "An analyte concentration measurement value whose analyte is chromium (Cr), expressing the concentration of chromium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Oxidation state is not specified.", "sonnet_draft": "An analyte concentration measurement value whose analyte is chromium (Cr), expressing the concentration of chromium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cr concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000516", "definition": "An analyte concentration measurement value whose analyte is barium (Ba), expressing the concentration of barium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is barium (Ba), expressing the concentration of barium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ba concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000517", "definition": "An analyte concentration measurement value whose analyte is lead (Pb), expressing the concentration of lead reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is lead (Pb), expressing the concentration of lead reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Pb concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000518", "definition": "An analyte concentration measurement value whose analyte is zinc (Zn), expressing the concentration of zinc reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is zinc (Zn), expressing the concentration of zinc reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Zn concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000519", "definition": "An analyte concentration measurement value whose analyte is copper (Cu), expressing the concentration of copper reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is copper (Cu), expressing the concentration of copper reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cu concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000520", "definition": "An analyte concentration measurement value whose analyte is nickel (Ni), expressing the concentration of nickel reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is nickel (Ni), expressing the concentration of nickel reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ni concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000521", "definition": "An analyte concentration measurement value whose analyte is cobalt (Co), expressing the concentration of cobalt reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is cobalt (Co), expressing the concentration of cobalt reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Co concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000522", "definition": "An analyte concentration measurement value whose analyte is arsenic (As), expressing the concentration of arsenic reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is arsenic (As), expressing the concentration of arsenic reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "As concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000523", "definition": "An analyte concentration measurement value whose analyte is uranium (U), expressing the concentration of uranium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is uranium (U), expressing the concentration of uranium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "U concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000524", "definition": "An analyte concentration measurement value whose analyte is thorium (Th), expressing the concentration of thorium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is thorium (Th), expressing the concentration of thorium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Th concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000525", "definition": "An analyte concentration measurement value whose analyte is rubidium (Rb), expressing the concentration of rubidium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is rubidium (Rb), expressing the concentration of rubidium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Rb concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000526", "definition": "An analyte concentration measurement value whose analyte is yttrium (Y), expressing the concentration of yttrium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is yttrium (Y), expressing the concentration of yttrium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Y concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000527", "definition": "An analyte concentration measurement value whose analyte is niobium (Nb), expressing the concentration of niobium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is niobium (Nb), expressing the concentration of niobium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Nb concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000528", "definition": "An analyte concentration measurement value whose analyte is molybdenum (Mo), expressing the concentration of molybdenum reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is molybdenum (Mo), expressing the concentration of molybdenum reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Mo concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000529", "definition": "An analyte concentration measurement value whose analyte is silver (Ag), expressing the concentration of silver reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is silver (Ag), expressing the concentration of silver reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ag concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000530", "definition": "An analyte concentration measurement value whose analyte is cadmium (Cd), expressing the concentration of cadmium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is cadmium (Cd), expressing the concentration of cadmium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cd concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000531", "definition": "An analyte concentration measurement value whose analyte is tin (Sn), expressing the concentration of tin reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is tin (Sn), expressing the concentration of tin reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sn concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000532", "definition": "An analyte concentration measurement value whose analyte is antimony (Sb), expressing the concentration of antimony reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is antimony (Sb), expressing the concentration of antimony reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sb concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000533", "definition": "An analyte concentration measurement value whose analyte is iodine (I), expressing the concentration of iodine reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Chemical form (e.g., iodide) is not specified.", "sonnet_draft": "An analyte concentration measurement value whose analyte is iodine (I), expressing the concentration of iodine reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "I concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000534", "definition": "An analyte concentration measurement value whose analyte is caesium (Cs), expressing the concentration of caesium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is caesium (Cs), expressing the concentration of caesium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cs concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000535", "definition": "An analyte concentration measurement value whose analyte is lanthanum (La), expressing the concentration of lanthanum reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is lanthanum (La), expressing the concentration of lanthanum reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "La concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000536", "definition": "An analyte concentration measurement value whose analyte is cerium (Ce), expressing the concentration of cerium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is cerium (Ce), expressing the concentration of cerium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ce concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000537", "definition": "An analyte concentration measurement value whose analyte is praseodymium (Pr), expressing the concentration of praseodymium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is praseodymium (Pr), expressing the concentration of praseodymium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Pr concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000538", "definition": "An analyte concentration measurement value whose analyte is neodymium (Nd), expressing the concentration of neodymium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is neodymium (Nd), expressing the concentration of neodymium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Nd concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000539", "definition": "An analyte concentration measurement value whose analyte is samarium (Sm), expressing the concentration of samarium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is samarium (Sm), expressing the concentration of samarium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sm concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000540", "definition": "An analyte concentration measurement value whose analyte is europium (Eu), expressing the concentration of europium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is europium (Eu), expressing the concentration of europium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Eu concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000541", "definition": "An analyte concentration measurement value whose analyte is gadolinium (Gd), expressing the concentration of gadolinium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is gadolinium (Gd), expressing the concentration of gadolinium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Gd concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000542", "definition": "An analyte concentration measurement value whose analyte is terbium (Tb), expressing the concentration of terbium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is terbium (Tb), expressing the concentration of terbium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Tb concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000543", "definition": "An analyte concentration measurement value whose analyte is dysprosium (Dy), expressing the concentration of dysprosium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is dysprosium (Dy), expressing the concentration of dysprosium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Dy concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000544", "definition": "An analyte concentration measurement value whose analyte is holmium (Ho), expressing the concentration of holmium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is holmium (Ho), expressing the concentration of holmium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ho concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000545", "definition": "An analyte concentration measurement value whose analyte is erbium (Er), expressing the concentration of erbium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is erbium (Er), expressing the concentration of erbium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Er concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000546", "definition": "An analyte concentration measurement value whose analyte is thulium (Tm), expressing the concentration of thulium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is thulium (Tm), expressing the concentration of thulium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Tm concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000547", "definition": "An analyte concentration measurement value whose analyte is ytterbium (Yb), expressing the concentration of ytterbium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is ytterbium (Yb), expressing the concentration of ytterbium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Yb concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000548", "definition": "An analyte concentration measurement value whose analyte is lutetium (Lu), expressing the concentration of lutetium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is lutetium (Lu), expressing the concentration of lutetium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Lu concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000549", "definition": "An analyte concentration measurement value whose analyte is hafnium (Hf), expressing the concentration of hafnium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is hafnium (Hf), expressing the concentration of hafnium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Hf concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000550", "definition": "An analyte concentration measurement value whose analyte is tantalum (Ta), expressing the concentration of tantalum reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is tantalum (Ta), expressing the concentration of tantalum reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ta concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000551", "definition": "An analyte concentration measurement value whose analyte is tungsten (W), expressing the concentration of tungsten reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is tungsten (W), expressing the concentration of tungsten reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "W concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000552", "definition": "An analyte concentration measurement value whose analyte is rhenium (Re), expressing the concentration of rhenium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is rhenium (Re), expressing the concentration of rhenium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Re concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000553", "definition": "An analyte concentration measurement value whose analyte is osmium (Os), expressing the concentration of osmium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is osmium (Os), expressing the concentration of osmium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Os concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000554", "definition": "An analyte concentration measurement value whose analyte is iridium (Ir), expressing the concentration of iridium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is iridium (Ir), expressing the concentration of iridium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ir concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000555", "definition": "An analyte concentration measurement value whose analyte is platinum (Pt), expressing the concentration of platinum reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is platinum (Pt), expressing the concentration of platinum reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Pt concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000556", "definition": "An analyte concentration measurement value whose analyte is gold (Au), expressing the concentration of gold reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is gold (Au), expressing the concentration of gold reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Au concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000557", "definition": "An analyte concentration measurement value whose analyte is mercury (Hg), expressing the concentration of mercury reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is mercury (Hg), expressing the concentration of mercury reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Hg concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000558", "definition": "An analyte concentration measurement value whose analyte is bismuth (Bi), expressing the concentration of bismuth reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is bismuth (Bi), expressing the concentration of bismuth reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Bi concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000559", "definition": "An analyte concentration measurement value whose analyte is scandium (Sc), expressing the concentration of scandium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is scandium (Sc), expressing the concentration of scandium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sc concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000560", "definition": "An analyte concentration measurement value whose analyte is bromine (Br), expressing the concentration of bromine reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized. Chemical form (e.g., bromide) is not specified.", "sonnet_draft": "An analyte concentration measurement value whose analyte is bromine (Br), expressing the concentration of bromine reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Br concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000561", "definition": "An analyte concentration measurement value whose analyte is gallium (Ga), expressing the concentration of gallium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is gallium (Ga), expressing the concentration of gallium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ga concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000562", "definition": "An analyte concentration measurement value whose analyte is selenium (Se), expressing the concentration of selenium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is selenium (Se), expressing the concentration of selenium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Se concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000563", "definition": "An analyte concentration measurement value whose analyte is germanium (Ge), expressing the concentration of germanium reported for a measured sample.", "review_note": "Only a subclass axiom is supplied; analyte link, unit and method are not axiomatized.", "sonnet_draft": "An analyte concentration measurement value whose analyte is germanium (Ge), expressing the concentration of germanium reported for a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ge concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000564", "definition": "An analyte concentration measurement value reported on a SiO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. It is unclear whether the oxide is a conventional expression of elemental content or a species actually present; unit, method and any conversion are not documented.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form silicon dioxide (SiO2), giving the concentration reported for silicon as SiO2 in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "SiO2 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000565", "definition": "An analyte concentration measurement value reported on a Fe2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. Fe2O3 may be a conventional expression for total iron rather than ferric oxide specifically; this is not documented. Unit and method are unspecified.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form Fe2O3 (iron(III) oxide), giving the concentration reported for iron as Fe2O3 in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Fe2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000566", "definition": "An analyte concentration measurement value reported on a Al2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. Whether the oxide is a conventional expression or a species actually present is not stated; relationship to Al concentration measurement value is unaxiomatized.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form aluminium oxide (Al2O3), giving the concentration reported for aluminium as Al2O3 in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Al2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000567", "definition": "An analyte concentration measurement value reported on a CaO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. CaO may be a conventional expression of calcium content rather than the species present (e.g., carbonate or sulfate in desert soils); not documented. There is no Ca element class in this batch.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form calcium oxide (CaO), giving the concentration reported for calcium as CaO in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CaO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000568", "definition": "An analyte concentration measurement value reported on a MgO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. Whether the oxide is a conventional expression or a species actually present is not stated; relationship to Mg concentration measurement value is unaxiomatized.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form magnesium oxide (MgO), giving the concentration reported for magnesium as MgO in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "MgO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000569", "definition": "An analyte concentration measurement value reported on a K2O oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. K2O is likely a conventional expression of potassium content; not documented. There is no K element class in this batch.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form potassium oxide (K2O), giving the concentration reported for potassium as K2O in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "K2O concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000570", "definition": "An analyte concentration measurement value reported on a Na2O oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. Whether the oxide is a conventional expression or a species actually present is not stated; relationship to Na concentration measurement value is unaxiomatized.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form sodium oxide (Na2O), giving the concentration reported for sodium as Na2O in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Na2O concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000571", "definition": "An analyte concentration measurement value reported on a TiO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. Whether the oxide is a conventional expression or a species actually present is not stated; relationship to Ti concentration measurement value is unaxiomatized.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form titanium dioxide (TiO2), giving the concentration reported for titanium as TiO2 in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "TiO2 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000572", "definition": "An analyte concentration measurement value reported on a MnO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. MnO is likely a conventional expression of manganese content rather than the species present; not documented. Relationship to Mn concentration measurement value is unaxiomatized.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form manganese(II) oxide (MnO), giving the concentration reported for manganese as MnO in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "MnO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000573", "definition": "An analyte concentration measurement value reported on a P2O5 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. P2O5 is likely a conventional expression of phosphorus content; not documented. Relationship to P concentration measurement value is unaxiomatized.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form diphosphorus pentoxide (P2O5), giving the concentration reported for phosphorus as P2O5 in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "P2O5 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000574", "definition": "An analyte concentration measurement value reported on a SO3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only a subclass axiom is supplied. SO3 is likely a conventional expression of sulfur content (e.g., sulfate) rather than the species present; not documented. There is no S element class in this batch.", "sonnet_draft": "An analyte concentration measurement value expressed in the oxide form sulfur trioxide (SO3), giving the concentration reported for sulfur as SO3 in a measured sample. The unit and measurement method are those given in the associated measurement record.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "SO3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000575", "definition": "An analyte concentration measurement value reported on a Cr2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Parent is RAK_0000030 only; no units, method or sample type are axiomatized. Oxide-form reporting is inferred from the label and may reflect instrument convention (e.g. XRF) rather than a true compound.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of Cr2O3 (chromium(III) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Cr2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000576", "definition": "An analyte concentration measurement value reported on a V2O5 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of V2O5 (vanadium(V) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "V2O5 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000577", "definition": "An analyte concentration measurement value reported on a ZnO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of ZnO (zinc oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "ZnO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000578", "definition": "An analyte concentration measurement value reported on a SrO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of SrO (strontium oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "SrO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000579", "definition": "An analyte concentration measurement value reported on a ZrO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of ZrO2 (zirconium dioxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "ZrO2 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000580", "definition": "An analyte concentration measurement value reported on a BaO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of BaO (barium oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "BaO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000581", "definition": "An analyte concentration measurement value reported on a La2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of La2O3 (lanthanum oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "La2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000582", "definition": "An analyte concentration measurement value reported on a CeO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of CeO2 (cerium dioxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CeO2 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000583", "definition": "An analyte concentration measurement value reported on a PrO2 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Praseodymium is more commonly reported as Pr6O11 or Pr2O3; PrO2 may be a reporting convention of the source, worth checking.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of PrO2 (praseodymium dioxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "PrO2 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000584", "definition": "An analyte concentration measurement value reported on a Nd2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of Nd2O3 (neodymium oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Nd2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000585", "definition": "An analyte concentration measurement value reported on a Sm2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of Sm2O3 (samarium oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sm2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000586", "definition": "An analyte concentration measurement value reported on a CuO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of CuO (copper(II) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CuO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000587", "definition": "An analyte concentration measurement value reported on a NiO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of NiO (nickel(II) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "NiO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000588", "definition": "An analyte concentration measurement value reported on a CoO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of CoO (cobalt(II) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "CoO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000589", "definition": "An analyte concentration measurement value reported on a PbO oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of PbO (lead(II) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "PbO concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000590", "definition": "An analyte concentration measurement value reported on a Sc2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of Sc2O3 (scandium oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Sc2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_0000591", "definition": "An analyte concentration measurement value reported on a Ga2O3 oxide basis for a material. The reporting basis does not establish the presence of that oxide as a chemical species or mineral phase.", "review_note": "Only parent axiom is RAK_0000030; units and method are not stated. Oxide form is inferred from the label and may be a reporting convention.", "sonnet_draft": "An analyte concentration measurement value that reports the concentration of Ga2O3 (gallium(III) oxide), expressed as an oxide, in a measured sample.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; wording revised.", "label": "Ga2O3 concentration measurement value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000003", "definition": "A data property relating a measurement value to the numerical value of a temperature measurement.", "review_note": "Domain is SIO measurement value; no range or unit is declared, so the temperature scale/unit is unspecified.", "sonnet_draft": "A data property relating a measurement value to the numerical value of a temperature measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has temperature value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000004", "definition": "A data property relating a measurement value to the numerical value of an atmospheric pressure measurement.", "review_note": "No range or unit is declared. The label says only 'pressure' while the description restricts it to atmospheric pressure.", "sonnet_draft": "A data property relating a measurement value to the numerical value of an atmospheric pressure measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has pressure value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000005", "definition": "A data property relating a measurement value to the numerical value of a relative humidity measurement.", "review_note": "Label says 'humidity' but description specifies relative humidity; no range or unit declared.", "sonnet_draft": "A data property relating a measurement value to the numerical value of a relative humidity measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has humidity value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000006", "definition": "A data property relating a measurement value to a date-and-time value of a temporal measurement.", "review_note": "No range declared, so the datatype (e.g. xsd:dateTime) and time zone are not axiomatized.", "sonnet_draft": "A data property relating a measurement value to a date-and-time value of a temporal measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has time value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000007", "definition": "A data property relating a measurement value to the numerical value of the annual mean temperature at a site.", "review_note": "No range or unit declared; the averaging period/year and data source are not specified. Domain is a generic measurement value, not site-specific.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the annual mean temperature at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has annual mean temperature value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000008", "definition": "A data property relating a measurement value to the numerical value of the annual total precipitation at a site.", "review_note": "No range or unit declared. Relation to the 'annual total rain' property (RAK_2000009) is not axiomatized; precipitation presumably includes rain.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the annual total precipitation at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has annual total precipitation value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000009", "definition": "A data property relating a measurement value to the numerical value of the annual total rain at a site.", "review_note": "No range or unit declared. Overlap with annual total precipitation (RAK_2000008) is unresolved.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the annual total rain at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has annual total rain value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000010", "definition": "A data property relating a measurement value to the start date and time of a temporal interval.", "review_note": "Domain is a measurement value, though the description concerns an interval boundary; no range declared, so datatype and time zone are unspecified.", "sonnet_draft": "A data property relating a measurement value to the start date and time of a temporal interval.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has start time value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000011", "definition": "A data property relating a measurement value to the end date and time of a temporal interval.", "review_note": "Domain is a measurement value, though the description concerns an interval boundary; no range declared, so datatype and time zone are unspecified.", "sonnet_draft": "A data property relating a measurement value to the end date and time of a temporal interval.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has end time value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000012", "definition": "A data property relating a measurement value to the numerical value of a chemical analyte concentration.", "review_note": "No range or unit declared; the unit is not fixed and may vary by instrument or analyte.", "sonnet_draft": "A data property relating a measurement value to the numerical value of a chemical analyte concentration.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has concentration value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000013", "definition": "A data property relating a measurement value to the numerical value of the error reported for a concentration measurement.", "review_note": "Kind of error (e.g. standard deviation, instrument-reported uncertainty) and unit are not specified; no range declared.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the error reported for a concentration measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has concentration error" }, { "iri": "https://rubalkhali.science/kb/RAK_2000014", "definition": "An object property relating an extraction process to a DNA extraction kit that participates in it as a material used.", "review_note": "Subproperty of SIO has participant, but no domain or range is declared, so the extraction-process and kit typing comes only from the description. Direction is inferred as process to kit.", "sonnet_draft": "An object property relating an extraction process to a DNA extraction kit that participates in it as a material used.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "uses DNA extraction kit" }, { "iri": "https://rubalkhali.science/kb/RAK_2000015", "definition": "A data property relating a value-bearing entity to the numerical value of a DNA concentration measurement.", "review_note": "Domain is SIO 'has value' (a property), which is likely a modelling error; a class such as measurement value was probably intended. No unit or range declared.", "sonnet_draft": "A data property relating a value-bearing entity to the numerical value of a DNA concentration measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has DNA concentration" }, { "iri": "https://rubalkhali.science/kb/RAK_2000016", "definition": "An object property relating a process to a primer that participates in it as a material used.", "review_note": "Subproperty of has participant; no domain or range declared, so process and primer typing is from the description only. Direction is process to primer.", "sonnet_draft": "An object property relating a process to a primer that participates in it as a material used.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "uses primer" }, { "iri": "https://rubalkhali.science/kb/RAK_2000017", "definition": "A data property relating a value-bearing entity to a literal nucleotide sequence string.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. No range declared, so the alphabet (e.g. IUPAC codes) is not constrained.", "sonnet_draft": "A data property relating a value-bearing entity to a literal nucleotide sequence string.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has sequence value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000018", "definition": "An object property, a specialisation of 'uses primer', relating a process to the forward primer used in it.", "review_note": "No domain or range declared, so the forward-primer typing comes from the label and description only.", "sonnet_draft": "An object property, a specialisation of 'uses primer', relating a process to the forward primer used in it.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "uses forward primer" }, { "iri": "https://rubalkhali.science/kb/RAK_2000019", "definition": "An object property, a specialisation of 'uses primer', relating a process to the reverse primer used in it.", "review_note": "No domain or range declared, so the reverse-primer typing comes from the label and description only.", "sonnet_draft": "An object property, a specialisation of 'uses primer', relating a process to the reverse primer used in it.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "uses reverse primer" }, { "iri": "https://rubalkhali.science/kb/RAK_2000020", "definition": "A data property relating a measurement value to the numerical value of a relative taxon abundance measurement.", "review_note": "No range declared, so whether values are fractions or percentages, and the normalisation basis, are not specified.", "sonnet_draft": "A data property relating a measurement value to the numerical value of a relative taxon abundance measurement.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has relative abundance value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000021", "definition": "A data property relating a measurement value to the numerical value of the monthly mean temperature at a site.", "review_note": "No range or unit declared; the month and data source are not specified.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the monthly mean temperature at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has monthly mean temperature value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000022", "definition": "A data property relating a measurement value to the numerical value of the monthly total precipitation at a site.", "review_note": "No range or unit declared. Overlap with monthly total rain (RAK_2000023) is not axiomatized.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the monthly total precipitation at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has monthly total precipitation value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000023", "definition": "A data property relating a measurement value to the numerical value of the monthly total rain at a site.", "review_note": "No range or unit declared. Overlap with monthly total precipitation (RAK_2000022) is unresolved.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the monthly total rain at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has monthly total rain value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000024", "definition": "A data property relating a measurement value to the numerical value of the monthly mean relative humidity at a site.", "review_note": "Label says 'humidity' while description specifies relative humidity; no range or unit declared.", "sonnet_draft": "A data property relating a measurement value to the numerical value of the monthly mean relative humidity at a site.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has monthly mean humidity value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000025", "definition": "A data property relating a value-bearing entity to a taxonomic lineage written as a semicolon-separated string of rank names.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. Rank set, taxonomy source and exact format are not specified.", "sonnet_draft": "A data property relating a value-bearing entity to a taxonomic lineage written as a semicolon-separated string of rank names.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has lineage string" }, { "iri": "https://rubalkhali.science/kb/RAK_2000026", "definition": "A data property relating a measurement value to the numerical value of an absolute taxon abundance, given as a read count.", "review_note": "No range declared. Absolute abundance here is a read count per the description, not an absolute cell number or normalised quantity.", "sonnet_draft": "A data property relating a measurement value to the numerical value of an absolute taxon abundance, given as a read count.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has absolute abundance value" }, { "iri": "https://rubalkhali.science/kb/RAK_2000070", "definition": "A data property relating a value-bearing entity to the total number of sequences in a FASTQ dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. For paired-end data it is unclear whether the total counts both reads; no range declared.", "sonnet_draft": "A data property relating a value-bearing entity to the total number of sequences in a FASTQ dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has sequence count" }, { "iri": "https://rubalkhali.science/kb/RAK_2000071", "definition": "A data property relating a value-bearing entity to the number of forward (R1) sequences in a paired-end FASTQ dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error; no range declared.", "sonnet_draft": "A data property relating a value-bearing entity to the number of forward (R1) sequences in a paired-end FASTQ dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has forward sequence count" }, { "iri": "https://rubalkhali.science/kb/RAK_2000072", "definition": "A data property relating a value-bearing entity to the number of reverse (R2) sequences in a paired-end FASTQ dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error; no range declared.", "sonnet_draft": "A data property relating a value-bearing entity to the number of reverse (R2) sequences in a paired-end FASTQ dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has reverse sequence count" }, { "iri": "https://rubalkhali.science/kb/RAK_2000073", "definition": "A data property relating a value-bearing entity to the percentage GC content of a FASTQ dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. Description says percentage, but no range is declared to confirm a 0-100 scale.", "sonnet_draft": "A data property relating a value-bearing entity to the percentage GC content of a FASTQ dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has GC content" }, { "iri": "https://rubalkhali.science/kb/RAK_2000074", "definition": "A data property relating a value-bearing entity to the percentage GC content of the forward (R1) reads of a dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error; no range declared to confirm a percentage scale.", "sonnet_draft": "A data property relating a value-bearing entity to the percentage GC content of the forward (R1) reads of a dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has forward GC content" }, { "iri": "https://rubalkhali.science/kb/RAK_2000075", "definition": "A data property relating a value-bearing entity to the percentage GC content of the reverse (R2) reads of a dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error; no range declared to confirm a percentage scale.", "sonnet_draft": "A data property relating a value-bearing entity to the percentage GC content of the reverse (R2) reads of a dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has reverse GC content" }, { "iri": "https://rubalkhali.science/kb/RAK_2000076", "definition": "A data property relating a value-bearing entity to the fraction of duplicated reads in a FASTQ dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. Duplicate detection method is not specified. Description says fraction whereas GC content says percentage; scale (0-1 vs 0-100) not declared.", "sonnet_draft": "A data property relating a value-bearing entity to the fraction of duplicated reads in a FASTQ dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has duplicate rate" }, { "iri": "https://rubalkhali.science/kb/RAK_2000077", "definition": "A data property relating a value-bearing entity to the fraction of duplicated forward (R1) reads in a dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error; scale (0-1 vs 0-100) and duplicate detection method not declared.", "sonnet_draft": "A data property relating a value-bearing entity to the fraction of duplicated forward (R1) reads in a dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has forward duplicate rate" }, { "iri": "https://rubalkhali.science/kb/RAK_2000078", "definition": "A data property relating a value-bearing entity to the fraction of duplicated reverse (R2) reads in a dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error; scale (0-1 vs 0-100) and duplicate detection method not declared.", "sonnet_draft": "A data property relating a value-bearing entity to the fraction of duplicated reverse (R2) reads in a dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has reverse duplicate rate" }, { "iri": "https://rubalkhali.science/kb/RAK_2000079", "definition": "A data property relating a value-bearing entity to the mean read length of a FASTQ dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. Unit (presumably bases) is not declared.", "sonnet_draft": "A data property relating a value-bearing entity to the mean read length of a FASTQ dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has read length" }, { "iri": "https://rubalkhali.science/kb/RAK_2000080", "definition": "A data property relating a value-bearing entity to the mean length of the forward (R1) reads of a dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. Unit is not declared.", "sonnet_draft": "A data property relating a value-bearing entity to the mean length of the forward (R1) reads of a dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has forward read length" }, { "iri": "https://rubalkhali.science/kb/RAK_2000081", "definition": "A data property relating a value-bearing entity to the mean length of the reverse (R2) reads of a dataset.", "review_note": "Domain is SIO 'has value' (a property), likely a modelling error. Unit is not declared.", "sonnet_draft": "A data property relating a value-bearing entity to the mean length of the reverse (R2) reads of a dataset.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has reverse read length" }, { "iri": "https://rubalkhali.science/kb/RAK_2000090", "definition": "An object property, a specialisation of 'has attribute', relating a control metadata assertion or disposition to a control metadata status that characterises it.", "review_note": "No domain is declared; the description mentions both assertions and dispositions, so the subject type is open. Range is control metadata status (RAK_0000314).", "sonnet_draft": "An object property, a specialisation of 'has attribute', relating a control metadata assertion or disposition to a control metadata status that characterises it.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has control metadata status" }, { "iri": "https://rubalkhali.science/kb/RAK_2000091", "definition": "An object property, a specialisation of 'has attribute', relating a control metadata assertion to a control assertion confidence descriptor that characterises it.", "review_note": "Description calls the confidence 'evidence-calibrated'; the calibration method is not axiomatized and is not defined here.", "sonnet_draft": "An object property, a specialisation of 'has attribute', relating a control metadata assertion to a control assertion confidence descriptor that characterises it.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has control assertion confidence" }, { "iri": "https://rubalkhali.science/kb/RAK_2000092", "definition": "An object property, a specialisation of 'is about', relating a control composition specification to a taxon expected in the control material.", "review_note": "Description says 'confirmed' specification but no axiom enforces confirmation. No range declared, so the taxon class is unconstrained.", "sonnet_draft": "An object property, a specialisation of 'is about', relating a control composition specification to a taxon expected in the control material.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has expected taxon" }, { "iri": "https://rubalkhali.science/kb/RAK_2000093", "definition": "An object property relating a reified control metadata assertion to the entity that is the subject of that assertion.", "review_note": "No range declared, so the subject type is unconstrained.", "sonnet_draft": "An object property relating a reified control metadata assertion to the entity that is the subject of that assertion.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has assertion subject" }, { "iri": "https://rubalkhali.science/kb/RAK_2000094", "definition": "An object property relating a control metadata assertion to the asserted-relation descriptor that identifies the relation being asserted.", "review_note": "None.", "sonnet_draft": "An object property relating a control metadata assertion to the asserted-relation descriptor that identifies the relation being asserted.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has asserted relation descriptor" }, { "iri": "https://rubalkhali.science/kb/RAK_2000095", "definition": "An object property relating a reified control metadata assertion to the entity, identified by IRI, that is the object of that assertion.", "review_note": "No range declared. Complementary to the literal-object property (RAK_2000096); exclusivity between them is not axiomatized.", "sonnet_draft": "An object property relating a reified control metadata assertion to the entity, identified by IRI, that is the object of that assertion.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has assertion object" }, { "iri": "https://rubalkhali.science/kb/RAK_2000096", "definition": "A data property, a specialisation of 'has value', relating a control metadata assertion to the literal that is the object of that assertion.", "review_note": "No range declared, so the literal datatype is unconstrained.", "sonnet_draft": "A data property, a specialisation of 'has value', relating a control metadata assertion to the literal that is the object of that assertion.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has assertion literal object" }, { "iri": "https://rubalkhali.science/kb/RAK_2000097", "definition": "An object property relating a control metadata disposition to the control metadata field descriptor of the field it concerns.", "review_note": "None.", "sonnet_draft": "An object property relating a control metadata disposition to the control metadata field descriptor of the field it concerns.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "concerns control metadata field" }, { "iri": "https://rubalkhali.science/kb/RAK_2000098", "definition": "A data property, a specialisation of 'has value', relating an asserted-relation descriptor to the IRI, given as an xsd:anyURI lexical value, of the relation it represents.", "review_note": "Description says 'validated', but no validation procedure is axiomatized; none is claimed here.", "sonnet_draft": "A data property, a specialisation of 'has value', relating an asserted-relation descriptor to the IRI, given as an xsd:anyURI lexical value, of the relation it represents.", "review_disposition": "Reviewed by Codex against supplied labels, axioms and dataset context; retained.", "label": "has relation IRI lexical value" } ] }