{
  "donor": "NA20905",
  "haplotype": "1",
  "assembly": {
    "sample_id": "NA20905",
    "haplotype": "1",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "NA20905_hap1_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042032625.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "62b68c8458b8e089fe44032729f957cf18206d8df827e5ed7e6b05a578a3236c",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "4dd8fe919e4c207e73069cfaec725f244d50f4a850d62903a8a8e04755f3c80a"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "ef2c6f95b89a3e08ceaad9f8ce8d0b895570638cf86173952172d458e4879594"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA20905/assemblies/release2/NA20905_hap1_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "aa3c14a0081f22a903e1cdbae2f41f4de037b0439e2f4b49cc1b9b70f544270f"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA20905#1#CM087474.1",
      "start_0based": 29803857,
      "end_exclusive": 33096466,
      "file": "region1.fa.gz",
      "file_sha256": "1ae70b9cef9e0430a6523697ac249f83cc6b1674c2a7c2a5e0f4d6bd1d2c7671",
      "length": 3292609,
      "ambiguous_bases": 0,
      "range": "199683486-200706857",
      "compressed_sha256": "a77b62c69dd1e4aa1591a60fcfec0d38e7ce5acb2fa30d5b34700e288307e53a",
      "bytes_downloaded": 1023372,
      "etag": "\"4648e67a35c6ad1793f2fa9e5654affa-13\"",
      "sequence_sha256": "5f5ae7d07539a7fc8648b680d9e5f86a4369a63c78a7d07f0e37588bdc4a8486"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3315,
      "ambiguous_bases": 0,
      "sequence_sha256": "55feda5dcb7a1e917b3fc59300741894e9414920635173d98546c832911893f4",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "2887f2c930511d34ec5be16e6d70183fd17ebfc0d05dbd4194fc6905a1916460",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3852,
      "ambiguous_bases": 0,
      "sequence_sha256": "52c8a1f586c4acf825a2f4f117c0df9f378d93f3e145bde36376786ebd84f4c5",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13820,
      "ambiguous_bases": 0,
      "sequence_sha256": "105e2db2ab47417192d62a2e0ebb1f85f3304cfa91249262058174de53d7df9b",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6593,
      "ambiguous_bases": 0,
      "sequence_sha256": "28b3708c110cbcfbd43f3f2ad45f0a49527b50239971bfa9b62aaa71dd90e093",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7231,
      "ambiguous_bases": 0,
      "sequence_sha256": "c100a8a2ffb32ac849dc6895447416406ffdff1a98135f6092b7563d81757e23",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "9b00fc3a39e9d48a6ead01a4a95963d883e38e9c99bde1e49a4a958ab62bb15a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11522,
      "ambiguous_bases": 0,
      "sequence_sha256": "7bb580f549fec8173a45e4640203f511450bf5cd6f6038b71cc312672bde1244",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
