{
  "donor": "NA18982",
  "haplotype": "1",
  "assembly": {
    "sample_id": "NA18982",
    "haplotype": "1",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.8",
    "assembly_date": "2024-10",
    "assembly_name": "NA18982_hap1_hprc_r2_v1.0.1",
    "source": "hpp",
    "genbank_accession": "GCA_046332025.1",
    "assembly_md5": "s3://human-pangenomics/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "19a349a068c07e4473b414e9108065d378213d8eb1cd16ec07c440dbd7324e90",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "bad0fa2e15ca58b2bcae6e5612e7446184ecba7609b09e7766a0446839ad4b0d"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "4eafe6ffe93e1db023c4eacfa5855f86771d574ca78619c6e29d1f0491ebba6f"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18982/assemblies/release2/NA18982_hap1_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "0187f829a69e8046ecd5867fdc44478b784adec9f9af51b026c49597bd812ae8"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18982#1#CM101421.1",
      "start_0based": 29790427,
      "end_exclusive": 33156138,
      "file": "region1.fa.gz",
      "file_sha256": "32c6ca0acf6f73ea1ea98082e47ef802cfa0017cd4627707a4abf6ca8336a508",
      "length": 3365711,
      "ambiguous_bases": 0,
      "range": "184124565-185186864",
      "compressed_sha256": "02ffacc1504a76022dcfe8e10ef6908836ba51ff02d48778691f0b9091accd1f",
      "bytes_downloaded": 1062300,
      "etag": "\"a77edb8b47eda41fa2f9f83f8096e90f-13\"",
      "sequence_sha256": "8b009df25e762d3158f0739732de5e5e996ea700cf3c4c442aa89449c34292c0"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "b97c51f34a8a9f4982dd5eb1f4230b9807f455ba1caf338e80f8bdf65c677f9f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "954548e90143808a267448f94c367e43db1429dcc40cec738b4508ca863bcff0",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4085,
      "ambiguous_bases": 0,
      "sequence_sha256": "3f09ff8583c6914bb298aa1779e44b23631f95d0c9b5a3c07afbe6c319b317f4",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 11495,
      "ambiguous_bases": 0,
      "sequence_sha256": "20a62cd35b8862a0e378ee960a194cc82e01921706e94e347ce9c856db490822",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6485,
      "ambiguous_bases": 0,
      "sequence_sha256": "0f103bb7233d535935eec921c489bbcd9229b3730a4386dc4d00335302005251",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7111,
      "ambiguous_bases": 0,
      "sequence_sha256": "3a7f1c2b17530da47a1b8b3226f17614b1ce9fd23ffd33a43307c2bd5b0b1a8a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9753,
      "ambiguous_bases": 0,
      "sequence_sha256": "dccc1311dd6ec160214e5fa5a87fdcbede862aa51e88810a4a7e14dacfe0877c",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "8e245ab6b3fe697dd30dad80acfd0bc218332952f406bfffe78a3f3a921f73c7",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
