{
  "donor": "NA18970",
  "haplotype": "2",
  "assembly": {
    "sample_id": "NA18970",
    "haplotype": "2",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.8",
    "assembly_date": "2024-10",
    "assembly_name": "NA18970_hap2_hprc_r2_v1.0.1",
    "source": "hpp",
    "genbank_accession": "GCA_046332065.1",
    "assembly_md5": "s3://human-pangenomics/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "d9319639d59a3e64c38279a8f68ea636cd70d7ffa9eea9c24571b46de41dd70b",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "e38f0dd0e15e6174e750ce1e295a93d9802f79078cd73992263804b952cd552e"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "5091edf71b72a07b46dfd5807c6adcaef2516e5b3896ff987868c938e24f41bd"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18970/assemblies/release2/NA18970_hap2_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "998a41829cb327e953b303542a395c13a5754c374319851f169ca7755fcb92f4"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18970#2#CM101481.1",
      "start_0based": 29816358,
      "end_exclusive": 33235726,
      "file": "region1.fa.gz",
      "file_sha256": "ebab48c7e097197c073c6ba41b46cc5a7a83ebc13df88d8dc1ce0616e06d46d9",
      "length": 3419368,
      "ambiguous_bases": 0,
      "range": "142603893-143685778",
      "compressed_sha256": "d91349540f1b435b967930576313811fa78a237bf55540439acce31acbc16095",
      "bytes_downloaded": 1081886,
      "etag": "\"f782ff760511f486c75504f2020fbbad-14\"",
      "sequence_sha256": "3b23a800fa5f2c7bd5dbc672362d4cb45c2c27f30685c4b39e08f2930fa68e96"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "b97c51f34a8a9f4982dd5eb1f4230b9807f455ba1caf338e80f8bdf65c677f9f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4318,
      "ambiguous_bases": 0,
      "sequence_sha256": "2f6622f35c07f9a42a86716d7db908a898ed90bb4fc6c624fa7677e4000dd6a9",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4094,
      "ambiguous_bases": 0,
      "sequence_sha256": "67e8ca872aefcacafc6ea148ffbacf57994ae98ddee02ef79b2153d628f726e0",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 14958,
      "ambiguous_bases": 0,
      "sequence_sha256": "a1ac6ac4339f12311574f70c9a32d509f2814bde3e64a879014f124c3d05bd67",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "59c7724f6661d90275ec8d016036697c38fde5778c157f202330e325d490a1c3",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 5849,
      "ambiguous_bases": 0,
      "sequence_sha256": "5baf75b15577ab1f2bd52219f89ac54e99d19f63a5994a1f805128afc7ed4b69",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9753,
      "ambiguous_bases": 0,
      "sequence_sha256": "dccc1311dd6ec160214e5fa5a87fdcbede862aa51e88810a4a7e14dacfe0877c",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "8e245ab6b3fe697dd30dad80acfd0bc218332952f406bfffe78a3f3a921f73c7",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}