{
  "donor": "NA18960",
  "haplotype": "2",
  "assembly": {
    "sample_id": "NA18960",
    "haplotype": "2",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.8",
    "assembly_date": "2024-10",
    "assembly_name": "NA18960_hap2_hprc_r2_v1.0.1",
    "source": "hpp",
    "genbank_accession": "GCA_046332225.1",
    "assembly_md5": "s3://human-pangenomics/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "b5b25ee7b2ee2323ac580770fd0bf68726ba4f957c5b36e820bc23b8113b0bc7",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "38008494f476713e41e7873aca8a380cf7b6826f217f352913620a38e9a12012"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "114bb095ceacb35da6a2a47c27f055e966825a9209be1e01e425c3eaa6b99e2d"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18960/assemblies/release2/NA18960_hap2_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "b62163f87291ded3072996df650c2a60fa9cd67a6fb442ce1835b7199e7de150"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18960#2#CM101559.1",
      "start_0based": 29728044,
      "end_exclusive": 33166200,
      "file": "region1.fa.gz",
      "file_sha256": "992040f74d6861193f01f98dd950b183023fbd8368ea010f46d3698e16ff1901",
      "length": 3438156,
      "ambiguous_bases": 0,
      "range": "183699458-184781179",
      "compressed_sha256": "ae4cee01105fb78aadecee3e5fe5b806450982c5a4b0156beb4cec3a393c94ad",
      "bytes_downloaded": 1081722,
      "etag": "\"cbe581ff4028f196364926dfdd9baa8d-14\"",
      "sequence_sha256": "c25d818d43b7fe6a0b22c61ffae813a66984dbebe700517c5db7adf69967a2db"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "b97c51f34a8a9f4982dd5eb1f4230b9807f455ba1caf338e80f8bdf65c677f9f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "6aa0d518eff610f66d4d56359091a22b7c8e78b4fcfe67fc33e413d428be184d",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4090,
      "ambiguous_bases": 0,
      "sequence_sha256": "df5a7e0a2ba0d71fef358399b255f0ad64a23cf4433d479beeebbf781e03ea1e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 14510,
      "ambiguous_bases": 0,
      "sequence_sha256": "06655ebdd6b71073aee9f5c17ecd679e4e3648c1027cb0741732dfdd32cfea24",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "a171841e9d594f5858e3cd5e022ab282f51420e9f0544a75b93a62f37a915d4e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7136,
      "ambiguous_bases": 0,
      "sequence_sha256": "a8fee3d08ccbd3e113f210e8faae29ff070148459cfdb3d1bfac12b32f19baff",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "48106b5386016321e339b0360fa83611eb2965ce1c1936bb4af30b7df6bdc486",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "dfb2ec287c1cdbdb0b1a3c1a1a1bb054202b34c2855f990d06894fbaada56518",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}