{
  "donor": "NA18944",
  "haplotype": "1",
  "assembly": {
    "sample_id": "NA18944",
    "haplotype": "1",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.8",
    "assembly_date": "2024-10",
    "assembly_name": "NA18944_hap1_hprc_r2_v1.0.1",
    "source": "hpp",
    "genbank_accession": "GCA_046332435.1",
    "assembly_md5": "s3://human-pangenomics/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "6197edc2440011778428054e260deb7fff43849210f3d3408ac67842ac7b349c",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "547335f50524c51e1ab6af21c4af38c8af08e8d73d8c23c06e54248c663ffe35"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "9e69b75cb2ac9dbce377e1c4083dead29c84bc91801d6a03ddcf2470397be6ab"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPP/NA18944/assemblies/release2/NA18944_hap1_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "99abd25ce379a205e4d3f777de5ef7c62e999deda47d2e2c89e316b4c603ff44"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18944#1#CM101645.1",
      "start_0based": 29808962,
      "end_exclusive": 33134408,
      "file": "region1.fa.gz",
      "file_sha256": "e8fc17d101b9968b33cb94d956c64b7144a53d82e7ac62673a2de51f1fc915e0",
      "length": 3325446,
      "ambiguous_bases": 0,
      "range": "273144102-274186778",
      "compressed_sha256": "4776e9b88855c200fe875e490a8346290a2386f5bde480af03ecdd59fbd0883a",
      "bytes_downloaded": 1042677,
      "etag": "\"f32873fa3fa29fb07a326f3c8d254d82-13\"",
      "sequence_sha256": "f02989d825ef282cc1ba32f2ad8a3ffc87a8920f62cf357da568bcf47cbd56fd"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "fc8785ae525b4296fdb0553cb7468a0393d0c8cb49675133ddaeaf9f41505f46",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "bc1db7238be9106644d17942a185db6eb0de608a65cc9395e49f0b1ff82718e1",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4085,
      "ambiguous_bases": 0,
      "sequence_sha256": "6a51e8ec6da54a0b33571d2d0d132f74434bca8d976c0eeb705e2dac1dae7dac",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13194,
      "ambiguous_bases": 0,
      "sequence_sha256": "404d1f8a2cc02731fbc5d8b2ddf113ef64da8d8588c37b2646624a5ff3d95dfd",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "2ed3c0b7f73fc0e5252632c5cf6f107adf9ff89b49ce4137b9ad55f52704308f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "278a1eaa3a8de59994d9aa638f8b6f79cd55399c3f0d0b186909509af6593736",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "48106b5386016321e339b0360fa83611eb2965ce1c1936bb4af30b7df6bdc486",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "99b3cd6d053bd6b8c978dd86406a3e2e6d92fff641232f363004a5352b5bde08",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
