{
  "donor": "NA18620",
  "haplotype": "2",
  "assembly": {
    "sample_id": "NA18620",
    "haplotype": "2",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "NA18620_hap2_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042077305.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "7989666d6d7c10162a814af9373fe132053d5db917eb190501c1984cfa498f45",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "9e79c4836dc16ab5ff7b786d8173a0697642724f93cdb5c14cb93f9fbcceb5a5"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "ac8b667dc2528a36ff8f81365c989836713d2a913c437e9774fc36ac2f69ad62"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18620/assemblies/release2/NA18620_hap2_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "8f37ed447c5b8342a7c57009cc6cafd33de03c738952c0c37c9f14d03d195da4"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18620#2#JBHIJV010000064.1",
      "start_0based": 29784027,
      "end_exclusive": 33012481,
      "file": "region1.fa.gz",
      "file_sha256": "dc7db76e502326e62a17e43d0c523ea6b65f6c746929ad256bb2025befc474c9",
      "length": 3228454,
      "ambiguous_bases": 0,
      "range": "728348593-729351714",
      "compressed_sha256": "4ee0048241ea8c5e12912af3c3be9210ce20aa11374bf5949c6d072574f55f77",
      "bytes_downloaded": 1003122,
      "etag": "\"f5e62e9b2fbda9336652103b5f19496c-14\"",
      "sequence_sha256": "2cf9c021b52c9929c815a9913b802fa7433405bf55be4b9cf5ece5a00d3a305f"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "8cdfc8e36a507638b5bfc8dd9386d2ef81093cd1368a94a285358a7e078c5272",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4166,
      "ambiguous_bases": 0,
      "sequence_sha256": "7878ea30b71a1728d8f7a5df3c4c1cfe6d00a07ab64d137e0ca8f0e0fd684f8b",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3313,
      "ambiguous_bases": 0,
      "sequence_sha256": "7a88eb83607db20b62f87150297f81fcf4f5009a0a64b425dc7867ba6e8c2fa7",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13192,
      "ambiguous_bases": 0,
      "sequence_sha256": "a183d57e214ba022e6a0b5b0329ffbec765d179f92ebb2bd25b2cb25f0f6dab6",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 5773,
      "ambiguous_bases": 0,
      "sequence_sha256": "2f7766c6f3f42b0233aca47649e2658f0402b74b898e24c6d1bca1acf9750335",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7231,
      "ambiguous_bases": 0,
      "sequence_sha256": "177f67656c2bbb9688449e31182a6672a142923b20ae77c125753b2f73f9ae04",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9757,
      "ambiguous_bases": 0,
      "sequence_sha256": "1dc152ef08a58368b5813a573e985a858d4eb2531b8e2ffe82e5f8a58dd0bb4a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11516,
      "ambiguous_bases": 0,
      "sequence_sha256": "b8044f5bee81573d1c5f7f205bc703fb8b92da9510e52f3b7bba09c038c03a35",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}