{
  "donor": "NA18608",
  "haplotype": "1",
  "assembly": {
    "sample_id": "NA18608",
    "haplotype": "1",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "NA18608_hap1_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042077625.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "fca28716eaf50bf8580f2af52b3e4f80049d6b2ba1abc5d0b788b538e2778c44",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "c46c77b05c17a753d6fb23b54e40fa097a4eb0ae8373ba73babe6b47a48de14b"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "b42908122f26d7e2231a5638bb433d66676e046584e1a40e8dc61cf9616ccb5c"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18608/assemblies/release2/NA18608_hap1_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "6217984808df93e5bb672dbf00a31a0498272db03e38546d1d300dbb0625321d"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18608#1#JBHIJW010000005.1",
      "start_0based": 29754551,
      "end_exclusive": 33074614,
      "file": "region1.fa.gz",
      "file_sha256": "46ebb214d2d5222a6b877b8306e3451579b16dcd6cffaba205c357b0eef98e56",
      "length": 3320063,
      "ambiguous_bases": 0,
      "range": "477516131-478539266",
      "compressed_sha256": "4acca519b418dd142cfe265515c600635c6429f5988664ac093aa94c6ef210a3",
      "bytes_downloaded": 1023136,
      "etag": "\"c9db66b255894e31486487791e74a5ca-13\"",
      "sequence_sha256": "fc61d8d4444f273a0eeab6ecaa9e9a047b0148c0890fbd9392689ac8d5557ea0"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "b97c51f34a8a9f4982dd5eb1f4230b9807f455ba1caf338e80f8bdf65c677f9f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "98dff7e8f5ea250fed8e2246681108b5a41f601b1bf6cfaf10e5852fdb3ccd19",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4081,
      "ambiguous_bases": 0,
      "sequence_sha256": "44ea127986174745047af2936809f0305539652fd199f8a4162fe69912d53a6d",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13845,
      "ambiguous_bases": 0,
      "sequence_sha256": "7e53cc362185675b907706c22096da441b0dfcda37a31628db347e3d7f95e168",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6485,
      "ambiguous_bases": 0,
      "sequence_sha256": "b8a3cd72fc23d2731e5fcace9c3fd6b22b576cc9fa3bdaf82c1d142a1e4f2b3e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7089,
      "ambiguous_bases": 0,
      "sequence_sha256": "2cf63b835719829b8fdf266394be841eaf9db7540fc2e962850251b3cf0c614b",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "e5f8749e6bd59130e091e5ea97556a413c7277e47ffb16bddf04ebc2173668f3",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "99b3cd6d053bd6b8c978dd86406a3e2e6d92fff641232f363004a5352b5bde08",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}