{
  "donor": "NA18570",
  "haplotype": "2",
  "assembly": {
    "sample_id": "NA18570",
    "haplotype": "2",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "NA18570_hap2_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042034465.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "c12c816965cb6332afa9bcf7ca57c07c932ae72cbd5e5b349f02fceadec1af2b",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "24d1be7d8a917daa8c4c11a94a337defe409e62c2d26d82b572b6723a7314184"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "ec6485a946f37b4c460cb881cc2a643b8e155e666b69fe5922b2d25e11c0c386"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18570/assemblies/release2/NA18570_hap2_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "5e5dbaae7ecbc1d496eadf934c8fcd1cc24d030058e5165cf7c3c4c837c6fcfe"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18570#2#JBHDXO010000039.1",
      "start_0based": 13677367,
      "end_exclusive": 17099840,
      "file": "region1.fa.gz",
      "file_sha256": "b1cf751eb740b5ce2af9371766e488bac70ca8d6fa86e101c5f252e6438698d5",
      "length": 3422473,
      "ambiguous_bases": 0,
      "range": "838867354-839930033",
      "compressed_sha256": "a4ea16359b922a4acb0fc6db0c60feb908187e9e3c4a44721f48d5c624c3e72a",
      "bytes_downloaded": 1062680,
      "etag": "\"ff06bfd96c3e48ed79af30d7add723e9-14\"",
      "sequence_sha256": "49c22479af0f91a2d6da968b2cc8380aecb84913dc5353b2a09ddbb803bb93a3"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "fc8785ae525b4296fdb0553cb7468a0393d0c8cb49675133ddaeaf9f41505f46",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "4208be22e62cd685515e85538f2237ba6bc6006f72d164c96cac0c2290b0a200",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3591,
      "ambiguous_bases": 0,
      "sequence_sha256": "669447171365d555c79b9f274c7b87f3f48c113463c24b01fdcde261762fb9d7",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 14518,
      "ambiguous_bases": 0,
      "sequence_sha256": "aca880b714a65070b3594915fad3cd60df269d79f139fe9254e93adb4030240b",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "2ed3c0b7f73fc0e5252632c5cf6f107adf9ff89b49ce4137b9ad55f52704308f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "278a1eaa3a8de59994d9aa638f8b6f79cd55399c3f0d0b186909509af6593736",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "48106b5386016321e339b0360fa83611eb2965ce1c1936bb4af30b7df6bdc486",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11532,
      "ambiguous_bases": 0,
      "sequence_sha256": "65b4d6c5fb4498c02c9d1a7033187e42ef61390c13341749bc61e766db19d731",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}