{
  "donor": "NA18565",
  "haplotype": "1",
  "assembly": {
    "sample_id": "NA18565",
    "haplotype": "1",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-10",
    "assembly_name": "NA18565_hap1_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_044166395.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "6173e1e499992b3268008eefc5f0fb80da64093e644926f4f4518b246e4c729b",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "57902327446143d366abe36c374f3a904f680d0e998dee7b6fe997d816760b27"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "7529f17b8556b33a2a978679d7506f207d66845138f4cddf207c283381a4838e"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/NA18565/assemblies/release2/NA18565_hap1_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "8901a7ff485c66278f5b0b546491381a723f325999a0983a04b23b8c4cf97d8e"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "NA18565#1#CM094320.1",
      "start_0based": 29780691,
      "end_exclusive": 33196591,
      "file": "region1.fa.gz",
      "file_sha256": "504ca47be171f590acfe7d9e7be7b172754b25ec32a57f4c0aff0f3c0418b72b",
      "length": 3415900,
      "ambiguous_bases": 0,
      "range": "256568259-257630367",
      "compressed_sha256": "88d272ee9f02d06a7392f5922b0b1c833da6a98d371a750df607dfb46abeb49e",
      "bytes_downloaded": 1062109,
      "etag": "\"d80ff126a6c7346eec39ef1d09c9034a-14\"",
      "sequence_sha256": "426e77b9e595e842538c4e28b6973c7dc3182cf602ba43d2b4fa95705f0091d7"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "b97c51f34a8a9f4982dd5eb1f4230b9807f455ba1caf338e80f8bdf65c677f9f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "bc1db7238be9106644d17942a185db6eb0de608a65cc9395e49f0b1ff82718e1",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4085,
      "ambiguous_bases": 0,
      "sequence_sha256": "6a51e8ec6da54a0b33571d2d0d132f74434bca8d976c0eeb705e2dac1dae7dac",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15395,
      "ambiguous_bases": 0,
      "sequence_sha256": "9b3ea26c18285e33ca652898a190d82894f97864ee7819dc1ffeecd9a17a7800",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "ec31c1c13f52306c6ee38164677eda034d54b48b8e210d4c7a12a4b0cb94ffbc",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "192c2241a69d51847a5f6821370a0b981e17f3420b79920fc50cfa080d1971b5",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "588dacbad3be170b8dd0a5f3e7594df778d185898056119e043dededd265f713",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11536,
      "ambiguous_bases": 0,
      "sequence_sha256": "70973a44e0bd55b03291b556c02a2d3c746311ca8fd123bdd0d74672d1412fef",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}