{
  "donor": "HG04228",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG04228",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG04228_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042036915.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "c3bc1e996b829ea563c7796469ab8ae9b54844fb640ca1e3b2821b676967b5f8",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "7d68e80697d648992bc809e10276395fabeeb09938a32d5dec06cb67569ffdc5"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "fd63296ec03620155135f4e1d5fdf6a627b797934cd367fc861ce72a2f31a288"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04228/assemblies/release2/HG04228_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "544312c242a2d5e719a8a9aaf4f1ed327180cec49aab3bb4741c0d2cc1b866d6"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG04228#2#CM088508.1",
      "start_0based": 29889149,
      "end_exclusive": 33230185,
      "file": "region1.fa.gz",
      "file_sha256": "542932d5b816e57a832f6b637760bcaf34826c4adb61a1e54fcf44b0e274306b",
      "length": 3341036,
      "ambiguous_bases": 0,
      "range": "210776887-211819408",
      "compressed_sha256": "4d3f036effe3d51e0aa7e521cd4711917868fbd2e4c91298f9cfa8108e51dc32",
      "bytes_downloaded": 1042522,
      "etag": "\"ca26add2c4c89663cc8d2602c1bbc134-14\"",
      "sequence_sha256": "11d21c754870d6bda0429dd2e599df29ed3a816a55d9c4268dba861ee92bda46"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3503,
      "ambiguous_bases": 0,
      "sequence_sha256": "877aa19753a5e2b2c02034107a92719641a0674264a65dd4cb0fcbf308a4440e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4278,
      "ambiguous_bases": 0,
      "sequence_sha256": "4406b630f3087ed2b9f6e1582f7067f3990bd04e7c7add22a77e6bd898d1a170",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3851,
      "ambiguous_bases": 0,
      "sequence_sha256": "97a508017c7005b621904e621c186ae0f1dea22d88a3e51de1eca9533a94b929",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 11476,
      "ambiguous_bases": 0,
      "sequence_sha256": "76b986480640c5553f4029934bf09d698bb58297d62f56e5a5e2497e3da29090",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6484,
      "ambiguous_bases": 0,
      "sequence_sha256": "4b871c37fa3113e064402ab6b3bc7e00139369a1bf81ffffc845182016b1d541",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7111,
      "ambiguous_bases": 0,
      "sequence_sha256": "3a7f1c2b17530da47a1b8b3226f17614b1ce9fd23ffd33a43307c2bd5b0b1a8a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9753,
      "ambiguous_bases": 0,
      "sequence_sha256": "dccc1311dd6ec160214e5fa5a87fdcbede862aa51e88810a4a7e14dacfe0877c",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "8e245ab6b3fe697dd30dad80acfd0bc218332952f406bfffe78a3f3a921f73c7",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
