{
  "donor": "HG04204",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG04204",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG04204_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042036425.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "7a07fac511620a2ef462e28a697eb36830350c688c3412e0f28dcdbe8f2a6b66",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "9e15a1840851042c290339b51e0f348a19da03d976c7905e0f4d11373143af9f"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "ceda4ddcf08b9e9f3e3e91750fe37477b7d4d4e4be06f23efd8bab114d87302a"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04204/assemblies/release2/HG04204_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "c72308c5321b4c003046eb28e2a6b6f2b692ae7c08fed65e3930d76ead31f500"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG04204#2#JBHIGZ010000014.1",
      "start_0based": 29802294,
      "end_exclusive": 33232033,
      "file": "region1.fa.gz",
      "file_sha256": "bb9de7dec21572783161d8013fa327933dfab9e18c6a7f9ee3c182abfb6eb037",
      "length": 3429739,
      "ambiguous_bases": 0,
      "range": "660803855-661885897",
      "compressed_sha256": "c263028553b5970870514fa0d16b3c6d7b479af1a03ba7f2c4d4a664d767050d",
      "bytes_downloaded": 1082043,
      "etag": "\"0df8e55d58ffd8cf6fec5a72fe3a5f24-14\"",
      "sequence_sha256": "a0bec3991349af2cc5fcfea53d6e65ec38738eb744e1a56c89e8cec36f93cbef"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3503,
      "ambiguous_bases": 0,
      "sequence_sha256": "877aa19753a5e2b2c02034107a92719641a0674264a65dd4cb0fcbf308a4440e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4278,
      "ambiguous_bases": 0,
      "sequence_sha256": "4406b630f3087ed2b9f6e1582f7067f3990bd04e7c7add22a77e6bd898d1a170",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3851,
      "ambiguous_bases": 0,
      "sequence_sha256": "97a508017c7005b621904e621c186ae0f1dea22d88a3e51de1eca9533a94b929",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15380,
      "ambiguous_bases": 0,
      "sequence_sha256": "ec0edd76d04b707ffb1ee514d9737c75825c73b8634ea552d74bf6dae83c540d",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6403,
      "ambiguous_bases": 0,
      "sequence_sha256": "a0e1e8bf254ee77b6ec33793b1539aaee8c5c0de804b56266971b3170319c2aa",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7477,
      "ambiguous_bases": 0,
      "sequence_sha256": "958c8bcdcdf39b00367c1434ac18f25becd518fc2f8eec82379c384916ac13c8",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9753,
      "ambiguous_bases": 0,
      "sequence_sha256": "dccc1311dd6ec160214e5fa5a87fdcbede862aa51e88810a4a7e14dacfe0877c",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "ca26a9d54feaeb17989ecd4edf3e97a0fd331cc23285f4978d3ca0b1be9d524a",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}