{
  "donor": "HG04204",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG04204",
    "haplotype": "1",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG04204_pat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042036795.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "16c840229ac13447b1e01c4bd62d6d1b2bd7ccda8e99a082396eec7c3fefde72",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "d1aa16526a9288671d7662ea1c198e4e904470babe829bbe5c31a7e4b10f74b8"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "ced6a1ab4323fbab7c92becb00d5e8bf9d4ef4ddd1c0f440084b1007ea3c29e3"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04204/assemblies/release2/HG04204_pat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "46f28dbbeb8f40d645d7703e481b5b3c8ef2406a515e3442de9fd5edc886bebd"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG04204#1#JBHIGY010000015.1",
      "start_0based": 29752040,
      "end_exclusive": 33117626,
      "file": "region1.fa.gz",
      "file_sha256": "c1c203a0efb2a639ef48876dde14e87b27e1e6e29b3515e2099a3c6171be3733",
      "length": 3365586,
      "ambiguous_bases": 0,
      "range": "655062178-656124204",
      "compressed_sha256": "7c535a2328a042fea0f6291a901132301d32e2894c98999b59e88d134d19e227",
      "bytes_downloaded": 1062027,
      "etag": "\"2bbda0647c6447126179b1717330ebf2-13\"",
      "sequence_sha256": "ab1ae292f4adc915c061b537cbcd91778d59d4a29a5c4912cec73b920de87eec"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "7db3eb9bd7bb6e9ea8cc442fa980a90039bffc361d11e62d1c87bb356f6e7515",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "0912cd3bec3375bbb8a9a9ae42e5ef63dc027a14e75aba9ad45c8e10b35ba1f3",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4090,
      "ambiguous_bases": 0,
      "sequence_sha256": "85883623e8d2cb497333abb5d7aca0800e7b9069b30b6a83d15e1ead4a25c488",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 11489,
      "ambiguous_bases": 0,
      "sequence_sha256": "3525e4be9e2c3b15fa85e3807ea741213cafd628ae1ead3e7de33007996d0d8c",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6485,
      "ambiguous_bases": 0,
      "sequence_sha256": "0f103bb7233d535935eec921c489bbcd9229b3730a4386dc4d00335302005251",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7111,
      "ambiguous_bases": 0,
      "sequence_sha256": "3a7f1c2b17530da47a1b8b3226f17614b1ce9fd23ffd33a43307c2bd5b0b1a8a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "29d93b3964bfca1bb7dc34777b203b194c4beae999d08c976f50402890d66f76",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11526,
      "ambiguous_bases": 0,
      "sequence_sha256": "e6ba748b5eb3caee9f114cf1486fbeffec1180be89dbbbb98f72ad00f8eed9c6",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
