{
  "donor": "HG04199",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG04199",
    "haplotype": "1",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.7",
    "assembly_date": "2024-09",
    "assembly_name": "HG04199_pat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042030015.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "aefd081c60489912182e300ab2d86c4b35fe860b38223f0ce20c0c23f0daf4d5",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "46c2b0525a20b2609e8cb04735960662a206dfc3b8b0b46c4b5dee86c0e89a7b"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "c0b6d40be7d3661374eab690439b3ae0fc65c1a3474d711e5b26686444556869"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04199/assemblies/release2/HG04199_pat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "c43f53dbdfb610bb14de690117da3b58e7743846fd7f80f5df48ad27b9564f52"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG04199#1#JBHDTH010000059.1",
      "start_0based": 29810519,
      "end_exclusive": 33272813,
      "file": "region1.fa.gz",
      "file_sha256": "a224e878b5fc72db4077e38a453facd12f1fc30fed3bb993e3b40d06409f835d",
      "length": 3462294,
      "ambiguous_bases": 0,
      "range": "854831240-855913087",
      "compressed_sha256": "2d68438ae676706a5d5865d4e80787cbc338001c885b13e63ec446add8729048",
      "bytes_downloaded": 1081848,
      "etag": "\"a1fdf707406e94ebe78c2211f7850116-13\"",
      "sequence_sha256": "c2548f4054fee29d62ddb2b1360e58e8050689d4c62ea4c92936fced6afe9d1a"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3518,
      "ambiguous_bases": 0,
      "sequence_sha256": "7aee19df8cbd6e6d8094371761bb347347b160b8342d73bbedce4260aa1e6e55",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "18d05513b45fd618e59fe4b2996b4b09db7455c8e0fabc5e5662ff25300c4181",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4094,
      "ambiguous_bases": 0,
      "sequence_sha256": "70dbf0897478fa5096bf2467ea3f05d5505bc593d9812942f81360751f5fae99",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 14522,
      "ambiguous_bases": 0,
      "sequence_sha256": "136d00e4d29c2e7fad042f2962878e5650c87f4b3d27e25306034fcedd7839da",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "2ed3c0b7f73fc0e5252632c5cf6f107adf9ff89b49ce4137b9ad55f52704308f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "278a1eaa3a8de59994d9aa638f8b6f79cd55399c3f0d0b186909509af6593736",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "1f46783b8dc885c0a9bf67168c5bf4ae0354ad4335b43dc4d03871844a1391d7",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "9e42d0ccf0d4a8cce6cd16de075f8895fd8076a46360cd52d18345ee813d70e1",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}