{
  "donor": "HG04184",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG04184",
    "haplotype": "1",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.7",
    "assembly_date": "2024-09",
    "assembly_name": "HG04184_pat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042028635.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "af1cce659f07cdfe64b8ff069878636da68b92e5fb3a2f45168753f17a92f0ee",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "28fe94b2af1d59cb1c3cb695225ec34dd273e13bce8a5bb7875d542c0b5b5632"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "9cce0f539a61af03f1aa71142b0d4a86b08fd361ef2928a735a600cb6f815d30"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG04184/assemblies/release2/HG04184_pat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "a1012c2e421665dface4885425376969cc367f67f66f9b3444eb086d0d09e483"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG04184#1#CM086460.1",
      "start_0based": 29793379,
      "end_exclusive": 33223698,
      "file": "region1.fa.gz",
      "file_sha256": "1325044dfe01217fea2d887a7511fb3f0697a708e2dba795f838d70c4451dfec",
      "length": 3430319,
      "ambiguous_bases": 0,
      "range": "270420183-271481543",
      "compressed_sha256": "0173f061c576c60dbb875f79a0eb507436bc3689107ce25a9ce58625a3081adb",
      "bytes_downloaded": 1061361,
      "etag": "\"97ee23601c8c5623d07903651152410d-14\"",
      "sequence_sha256": "8717ed9a79c15c8df1682a88b6ad74339e8b8056d1bfbead80d9e214118f6318"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3503,
      "ambiguous_bases": 0,
      "sequence_sha256": "877aa19753a5e2b2c02034107a92719641a0674264a65dd4cb0fcbf308a4440e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "cd549d087365a13927f3f6b7cad33e48d56e775e2ca0d524cd6bcfd0a9f05909",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4095,
      "ambiguous_bases": 0,
      "sequence_sha256": "2a1bb241471d3f12eb4f18bd2777565269278ddad58703fd147ff855218fc609",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 16120,
      "ambiguous_bases": 0,
      "sequence_sha256": "a6e695c05e24028b7434ced9f1fc79b46b281f40d6b52218abbd1db53592eced",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6403,
      "ambiguous_bases": 0,
      "sequence_sha256": "a0e1e8bf254ee77b6ec33793b1539aaee8c5c0de804b56266971b3170319c2aa",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "97b06e5ce546feb444c9b79cc22aa6e9a660cbbfb14ad54c27874b8c519a353f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9300,
      "ambiguous_bases": 0,
      "sequence_sha256": "9dd39780de53c25736acb940e8e226abbe6d924ea3b8bac730413c42dd54a6e7",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11462,
      "ambiguous_bases": 0,
      "sequence_sha256": "d504749b81552b50e4401f681b86ac46d9a7f710a556df7c0dfeea0f66c3e782",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}