{
  "donor": "HG03710",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG03710",
    "haplotype": "1",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.7",
    "assembly_date": "2024-09",
    "assembly_name": "HG03710_pat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042030055.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "a780314d57413481bd08a64ed03c85b0f24a682fb14a6154b7bf007c40ad2b8d",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "b39c5dac2bc6bc6b36a0c7620a936b9e5f4fa46e8c29e6fd4f7627a3c0096a75"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "bdba4fbe9e6d677a590639dbfabfde6407a24a1fa2284b8da76aceda3f045c5a"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG03710/assemblies/release2/HG03710_pat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "866959649739d8c1e10e3e73e68d8108545467ec28f7c7f1b6af9ad2f80bc4d8"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG03710#1#CM086869.1",
      "start_0based": 29829437,
      "end_exclusive": 33271237,
      "file": "region1.fa.gz",
      "file_sha256": "47be066aca8330bbbd20bffa2b56068a06a009a74a8a2eb63f57e233eb2aa8ec",
      "length": 3441800,
      "ambiguous_bases": 0,
      "range": "194462984-195545158",
      "compressed_sha256": "348f86483dc5a95462edb211b50ee3458b20a13fb5dae6a3aa2719e92900f8f7",
      "bytes_downloaded": 1082175,
      "etag": "\"678ac5aa686da93008248c3b0f55668b-13\"",
      "sequence_sha256": "de384facd273d35d099a15186071d2c6d9cacc26d9a0d1971f79407ce5549aeb"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3503,
      "ambiguous_bases": 0,
      "sequence_sha256": "877aa19753a5e2b2c02034107a92719641a0674264a65dd4cb0fcbf308a4440e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "90475267e942bbcb696c04e9709b15274409ed1a3e24990f8fa9593e9d253c17",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4085,
      "ambiguous_bases": 0,
      "sequence_sha256": "1833c79bb443f1ac15e89ea7a36153aaf7b03b2f6e767ae753d98e492bef6ae2",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15384,
      "ambiguous_bases": 0,
      "sequence_sha256": "02f75399fcb952189898dd0cc4618994a5aac1c58ef399b448ba93f9bccbc0eb",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6403,
      "ambiguous_bases": 0,
      "sequence_sha256": "a0e1e8bf254ee77b6ec33793b1539aaee8c5c0de804b56266971b3170319c2aa",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7477,
      "ambiguous_bases": 0,
      "sequence_sha256": "958c8bcdcdf39b00367c1434ac18f25becd518fc2f8eec82379c384916ac13c8",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "14d0a04b04f2d7d840ee3e04dc99c57d32454c47efb522f9380e27eedd1a633a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11532,
      "ambiguous_bases": 0,
      "sequence_sha256": "83d9ea4ba962c8ca0371bac228a67ebc394b4e0a7ef291d3fc18605017b68360",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}