{
  "donor": "HG03017",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG03017",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG03017_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042038595.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "21e79573605b3b0429da9e9e72f7642c41ef08c5648f898ef0c6e8356149278d",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "35ebc6c7c9ad7e3e0c37472078d38051c29f4438be4edd0cbc1d34f3db0832fd"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "7d3ca91dbd023dd824739d64720a2e8bace0f898899ea3bd250d13f74beb7d87"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG03017/assemblies/release2/HG03017_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "47eb63750de88852c8a5600a1c44463f5befe34522fb843e6eca23a68405f49b"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG03017#2#CM088928.1",
      "start_0based": 29818778,
      "end_exclusive": 33125754,
      "file": "region1.fa.gz",
      "file_sha256": "89ba9d2daa124fd92fbdb51d59b1c5ac499193e176198386de40421cee0ada8f",
      "length": 3306976,
      "ambiguous_bases": 0,
      "range": "268433303-269456282",
      "compressed_sha256": "e25e0d140c491b047042ebc9ae3ba5e5ceca88da99cb5c5203da7ce73797bdf9",
      "bytes_downloaded": 1022980,
      "etag": "\"6f3513a37822c5b904ec496b4f7412f7-14\"",
      "sequence_sha256": "4a04d7b2960ff315c7d8ae6e4724ae22e2667aec6679def86fdcdb04222bf56f"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3503,
      "ambiguous_bases": 0,
      "sequence_sha256": "f45e1341773da7c0e422998dae0351370c663b0791b6af5566eda4a3410ede67",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "98dff7e8f5ea250fed8e2246681108b5a41f601b1bf6cfaf10e5852fdb3ccd19",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4093,
      "ambiguous_bases": 0,
      "sequence_sha256": "f9ac8c520c2261a99b8f7488379360c00a986d66c8591ced891928c24fe641b1",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 11056,
      "ambiguous_bases": 0,
      "sequence_sha256": "f64e76467edb9344620d05e17eb15adc2961a2c90c80c459a2805b982c4d677e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6485,
      "ambiguous_bases": 0,
      "sequence_sha256": "fa38f6843c8eaf4fb7649f28aa7d6701e14b1a4d1559b0b1a4ce5ee9b0d1591e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7111,
      "ambiguous_bases": 0,
      "sequence_sha256": "3a7f1c2b17530da47a1b8b3226f17614b1ce9fd23ffd33a43307c2bd5b0b1a8a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 5952,
      "ambiguous_bases": 0,
      "sequence_sha256": "50b8608ecf58c987d944b6eb35f4127087e663c966e2fe15617c494dba688069",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11472,
      "ambiguous_bases": 0,
      "sequence_sha256": "c6500ec737eaaf6ea65e59cfa88a16e71b6cea6124b7ef79d3b308737b8055d0",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}