{
  "donor": "HG02698",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG02698",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.7",
    "assembly_date": "2024-09",
    "assembly_name": "HG02698_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042029495.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "be85751676ee7e1b0b28c450dd11a6769585876982ec9143fe6820638fe5fc2d",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "f4989e42780cd0e33db9b5d7d58ea7a265ad02cfd918e8368fc7feda8371f6b6"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "62f41b4b3b3c2306f8795eb64dba5a687d33b694026d0528f5910e8badf209ea"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02698/assemblies/release2/HG02698_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "79ada6bc87d486197c1a8748844723e06c1cb24c9cf5f1f6e3df5602fee13ab9"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG02698#2#CM086846.1",
      "start_0based": 29858575,
      "end_exclusive": 33178123,
      "file": "region1.fa.gz",
      "file_sha256": "791267e0814cea798bc9c482bffae1821d1dea1d2e8ebe75697753430d978ade",
      "length": 3319548,
      "ambiguous_bases": 0,
      "range": "144333623-145376508",
      "compressed_sha256": "d96c8ed470c8a0f98018493b10124cf7355b20992980a5b122852898cfbc6e3f",
      "bytes_downloaded": 1042886,
      "etag": "\"75bd230d1463b86cef4f9b3c83abe427-14\"",
      "sequence_sha256": "d2482f08e056b880c29cf34bbfe311c23cefbfa0c3db74d865663810a9c01683"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "e9792f0d31eac5c2354f3783f96ff2c5d9b1c676cb703fe3393f029639d1b030",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4299,
      "ambiguous_bases": 0,
      "sequence_sha256": "4b33a7c180a769c62029d1a6421a9b067ed37e039f56873f9bba2489afb7c42f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3867,
      "ambiguous_bases": 0,
      "sequence_sha256": "20eae1bbffc24aa6f479bc0cec2d882aca571934b7ab96194f2da1d2bddeea0f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13855,
      "ambiguous_bases": 0,
      "sequence_sha256": "ba6c5c65bb545ad31cc7c48bc3e58efdf2d47f93d7ed91dc6e1ac8629bbe9656",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6030,
      "ambiguous_bases": 0,
      "sequence_sha256": "3f5d6af301fa83c8648478d3ff0d601a244c0506b7819e5c0e66afc11ce00e90",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7102,
      "ambiguous_bases": 0,
      "sequence_sha256": "e9436a2d429f365aeb3df25684416a61faec7fc04a4d46c870db436b840d7f3d",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "1f46783b8dc885c0a9bf67168c5bf4ae0354ad4335b43dc4d03871844a1391d7",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 10137,
      "ambiguous_bases": 0,
      "sequence_sha256": "cdb73393843741fdf2ff2132502edd3b17025c797dfb12b905740f16161ca4df",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
