{
  "donor": "HG02514",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG02514",
    "haplotype": "1",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-10",
    "assembly_name": "HG02514_pat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_045523115.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "6fb51dd31b682d8fc62df0e147cfbf1153052708ccbaf4082089c9e51d8dd5e6",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "a94d85f6716f16a8e680ef9c9a46257a24b40e0947abae5bb40d80a8e88251ee"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "002c452575aa15d28f84c1aa3a741fd82cb647614c202aa679078d5033c5e198"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02514/assemblies/release2/HG02514_pat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "bf906c8905ae93aa54c99dccca98eba51a7431ace92aba213adb77eae8ead8b7"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG02514#1#CM098732.1",
      "start_0based": 29796541,
      "end_exclusive": 33318243,
      "file": "region1.fa.gz",
      "file_sha256": "3fd0a70eeabeae9c5c42d519838235e8e1ffdc5ae9ee2f5d804e6fe8a89a8314",
      "length": 3521702,
      "ambiguous_bases": 0,
      "range": "271350078-272452235",
      "compressed_sha256": "5b81dd36f4b7dee7a03fce68e49631084e34f8590b5e30b46295976230bb34f7",
      "bytes_downloaded": 1102158,
      "etag": "\"638889e5c04d50f19b62b4c7a1cd6134-13\"",
      "sequence_sha256": "c19e42279aa56d2e528573af580178c5faccbad0e9a8dc59db4faec31459d460"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3518,
      "ambiguous_bases": 0,
      "sequence_sha256": "87422c81553e046a31299827c96279cb94b4b5a9b2aed0ffa6c5403f67b1240f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4278,
      "ambiguous_bases": 0,
      "sequence_sha256": "4406b630f3087ed2b9f6e1582f7067f3990bd04e7c7add22a77e6bd898d1a170",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3851,
      "ambiguous_bases": 0,
      "sequence_sha256": "97a508017c7005b621904e621c186ae0f1dea22d88a3e51de1eca9533a94b929",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15380,
      "ambiguous_bases": 0,
      "sequence_sha256": "ec0edd76d04b707ffb1ee514d9737c75825c73b8634ea552d74bf6dae83c540d",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6403,
      "ambiguous_bases": 0,
      "sequence_sha256": "a0e1e8bf254ee77b6ec33793b1539aaee8c5c0de804b56266971b3170319c2aa",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7377,
      "ambiguous_bases": 0,
      "sequence_sha256": "e73d74d6e091e4b9c09eaf1dea5f6c3f4d32cc5798a33b9c0a130eb3b8bdd178",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9775,
      "ambiguous_bases": 0,
      "sequence_sha256": "84a4310af0f27eb13f7ec1cb73523c8ded7afdddb1962995594e99910436eb1a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11522,
      "ambiguous_bases": 0,
      "sequence_sha256": "3a6d8c32f701ea62f436ababd5e9bbe5a10ad8ffcc4570693af21cdf55917bc8",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}