{
  "donor": "HG02178",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG02178",
    "haplotype": "1",
    "phasing": "hic",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG02178_hap1_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042077705.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "c418f4e7b5bae85147f39abb3c658d2e1668f27025e1f0a0345f1a3bc279cbc6",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "82e50e5e6f0ece3f57ecee88354a8ffe9fe12c627ccd79590fe107680982ab04"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "89f24427a9257c271292268fc36921c350aa8b6c73ef597cf125e8fef7c3b2e9"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02178/assemblies/release2/HG02178_hap1_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "043efce90957960a08f1a81c6e1b10c35b4ef12137f7b5e73ec3c73521a5f9d9"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG02178#1#CM089925.1",
      "start_0based": 29830323,
      "end_exclusive": 33253816,
      "file": "region1.fa.gz",
      "file_sha256": "c829affe593a61afab5af94db9d4436a40ea9a932181e314067c1f20ac9ba651",
      "length": 3423493,
      "ambiguous_bases": 0,
      "range": "197154974-198217320",
      "compressed_sha256": "f7ad231b6890e95b4d33f54a5225dde67bc37771d2482f4732ce261ed8d0cc50",
      "bytes_downloaded": 1062347,
      "etag": "\"6851e8948ec91d59aac8f930f483d592-14\"",
      "sequence_sha256": "6f53867ada15194d057f18a29521c0ebbf5f145013528d8d5f96d8be1bebf4e6"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3503,
      "ambiguous_bases": 0,
      "sequence_sha256": "08f88cf72b8d8624b59de042c0d047b2ae6c8c88bc2ebb9d1a51b29afde22b2d",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "313274a03a602a882d55aeff30a88ffd80b50631d2bf8ce199cf97715c218a3f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4094,
      "ambiguous_bases": 0,
      "sequence_sha256": "b89c7d6a41dc1a3b7a316969c49f0ef6b5cdd9393b4fca2dad60e74b23ec1533",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15395,
      "ambiguous_bases": 0,
      "sequence_sha256": "7c38f309ce470ac79363844402b996c99302370e7515803a931c5aab4e3583ae",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "74b740ecea794961e73a781c0b55401e8d8eb337df6d75b16389c045fc3811d0",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "192c2241a69d51847a5f6821370a0b981e17f3420b79920fc50cfa080d1971b5",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "48106b5386016321e339b0360fa83611eb2965ce1c1936bb4af30b7df6bdc486",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "0b43255bb28cdce8f7fbb9365166735bb63a319c042e6fd1c43b159027774a7e",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}