{
  "donor": "HG02135",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG02135",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG02135_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042036245.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "4f301f3ad30f8d98add40fb09cb170daefb698c136f217e267a675b154c152d4",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "bef4d9246410e62a562319db3f1f5731a7814364ecd62ecedbee2317c3aa71b7"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "effc26b3f83a7d7980bc50c9a08ac3958003af142984d90a5f9b2f343fb7fd8c"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02135/assemblies/release2/HG02135_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "3e361b397094120d4aaeaeab38b98d5bcc8135eee9c1f95c434e54e456739b63"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG02135#2#CM088319.1",
      "start_0based": 29800628,
      "end_exclusive": 33222361,
      "file": "region1.fa.gz",
      "file_sha256": "48c508a78ece1c90b4e1e17d03001f6cb73e37fa64d94b4f5f2ec3bb10df17f6",
      "length": 3421733,
      "ambiguous_bases": 0,
      "range": "64554591-65617247",
      "compressed_sha256": "d748886a592e0edef494ea6690eb08092d655a8e7e13c0c1a5eab2662226c9f4",
      "bytes_downloaded": 1062657,
      "etag": "\"086d9fb59370d558757fae7516b0d1a1-14\"",
      "sequence_sha256": "df96ac1b6700cde422850c0f3512be29392385d2d23ff3b8b0c5bb97502429ce"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "8a5287ccdcfac947d187ee863f32ca79fb12964e93dce0625e1975c4a1934240",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 3359,
      "ambiguous_bases": 0,
      "sequence_sha256": "6487e3c17cace1098f41e9b24d5f763d10c7f8b510f7f83e5fdd4fa67d921435",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4094,
      "ambiguous_bases": 0,
      "sequence_sha256": "ae27078002b2a970e5a2d941e539171352c2e0e8190abecc4b8fdd070513ee86",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15394,
      "ambiguous_bases": 0,
      "sequence_sha256": "95ae51002b4b4503fd8bff285576746cc2b5d21b1f0978dbc293871334148237",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6437,
      "ambiguous_bases": 0,
      "sequence_sha256": "ec31c1c13f52306c6ee38164677eda034d54b48b8e210d4c7a12a4b0cb94ffbc",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "192c2241a69d51847a5f6821370a0b981e17f3420b79920fc50cfa080d1971b5",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "9b31d7d08dd7a11ad87f1dcd80bf271e392c7c564cd05c5928cf42877f0b26d1",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "99b3cd6d053bd6b8c978dd86406a3e2e6d92fff641232f363004a5352b5bde08",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}