{
  "donor": "HG02071",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG02071",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG02071_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_042036105.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "d7422280f117b3f9bbbbf0a54306cc5f824fd4d2c9f3e2349e4aae53fa2ca56d",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "16a440853ee64f8f2a54575bda4718ef6b2b858bce3545a95809e360880e9962"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "0d9b3f70cd0fcd6a2c86c62d362a70483984f56073d59826fd4540f500083773"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG02071/assemblies/release2/HG02071_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "031008aca585fd4b77db700cd16ad3bea504f0a58f508e9072299c3be2c16929"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG02071#2#CM088283.1",
      "start_0based": 29736170,
      "end_exclusive": 33049331,
      "file": "region1.fa.gz",
      "file_sha256": "127820126f0f10065e4ef88b66b6b35a37db3fe272a0157cf95f6859a5e649af",
      "length": 3313161,
      "ambiguous_bases": 0,
      "range": "199750402-200773273",
      "compressed_sha256": "7e56105ec3c622e6ecfbf2d9c7d5488e104478e2a20cc7cc628e63e0bcb63cc9",
      "bytes_downloaded": 1022872,
      "etag": "\"3cb19d603f1885af90536f4b7e13b3aa-14\"",
      "sequence_sha256": "d20b4b8a8eab802d55c5d8f001773d203753bb3c3995d9bc55caa9e50b8bf41c"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "447c98dda51fdd272f3c74c23e51dc3a618d0cd4a21a7492b120bf44b593b450",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "bf0739cb6cbfbfddae0f6685c7429d918e96ca2c7c5a9aac20ab6b011747fa14",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3987,
      "ambiguous_bases": 0,
      "sequence_sha256": "c0abf115c5d1e262cc202662392de8ef1e5f238fe071e585befb1e74c68475b7",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13269,
      "ambiguous_bases": 0,
      "sequence_sha256": "19c9483052e63e16e3315ea7f27266058ef5e52c14fe1bb78df7b427794f4808",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6560,
      "ambiguous_bases": 0,
      "sequence_sha256": "46c041824d27faa88e9d52151cc31d2089f67451dba8aa2e6295d781511462ce",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7233,
      "ambiguous_bases": 0,
      "sequence_sha256": "ad614182d82ae9633cc6d537b457fd30cd62280847e59db1f1a8dc66cba23a08",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9816,
      "ambiguous_bases": 0,
      "sequence_sha256": "62639ab1341e18f6567b0049f1348a7b37dd6cc9f5cc48609874264d1776ad47",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "694e0a17f03d3ce59d733c6524e75b4b3756cddd4bcc9990e4cefb9eae9153f2",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
