{
  "donor": "HG00673",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG00673",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG00673_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_018472565.2",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "4a15f9efcaa5e78cea0a9c9eec8da67f8b2e5297197904c2e384283687ccee08",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "06253f684562f0e105cea217059ee13ec37e45544a2f504bd69409dff35a14b1"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "d186afca10bcf194e36008066ce1e2b83596a2bc94c7a3c323d3e860aa78ddbe"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00673/assemblies/release2/HG00673_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "5275ef6c59eb776e95bb6e3a076481dd8390d041dd6b3d94b7344e4cac8a567f"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG00673#2#CM089157.1",
      "start_0based": 29801924,
      "end_exclusive": 33049466,
      "file": "region1.fa.gz",
      "file_sha256": "8d7dd4ddcbc2bf22e43f7fe8a1f273b7e0c36a4e36a5bca0ea4cb59094a2bd4c",
      "length": 3247542,
      "ambiguous_bases": 0,
      "range": "257983972-258986623",
      "compressed_sha256": "5ab097a4ca4816b81d11a58e5104f56304a4bebe0790f2fe69f78f01504249ed",
      "bytes_downloaded": 1002652,
      "etag": "\"0479fcb409d5572f4587b50e5af29309-14\"",
      "sequence_sha256": "eb510f596963d222a090c1ac891187c4d301adbd6f66ba28fb33038ae98881b2"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "8a5287ccdcfac947d187ee863f32ca79fb12964e93dce0625e1975c4a1934240",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4318,
      "ambiguous_bases": 0,
      "sequence_sha256": "2a7b5ea94cbca21a4203ebe71803d724bea6e90e90c68598b55b09f611abaf48",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4070,
      "ambiguous_bases": 0,
      "sequence_sha256": "c24ffa5c857aa52b7b897f175351131dfbd5825faaf1805568b68b84fadc1017",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13824,
      "ambiguous_bases": 0,
      "sequence_sha256": "18b9baf0fbdf1a5167d766c907073885507bd7b2d85a27a67cc23e1fd9f3f41f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6485,
      "ambiguous_bases": 0,
      "sequence_sha256": "b3de5996efbfb408ad6cc456ce23486a8eb3df06f4d80eaff56f8436fb3a025b",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7111,
      "ambiguous_bases": 0,
      "sequence_sha256": "3a7f1c2b17530da47a1b8b3226f17614b1ce9fd23ffd33a43307c2bd5b0b1a8a",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "120c6a94b726cf652493b821ed8388387ec792291fb40025e43d5fa0e60cf1cb",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11462,
      "ambiguous_bases": 0,
      "sequence_sha256": "e705e7b453bab3c311019871eae36033e3ac74ea5f411c1bdf4c62fb5acebd36",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
