{
  "donor": "HG00673",
  "haplotype": "1",
  "assembly": {
    "sample_id": "HG00673",
    "haplotype": "1",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.9",
    "assembly_date": "2024-09",
    "assembly_name": "HG00673_pat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_018472585.2",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "eb55dacdd21cea07c177a52a2fe799062b2767e6061c680117de40d62fdb95f6",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "0dfae599f80005c88e6f254db01ce7f6f7d250b97465afd38acdb47a29383f1d"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "2aa00b452b3956a7a13e55b9aec8834931aad6a13087f2a5c4596161bd3b16cd"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00673/assemblies/release2/HG00673_pat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "4066571523d492c916bf6a3e5455efca022ef7e53875eca23bb04883a7168a87"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG00673#1#CM089145.1",
      "start_0based": 29803848,
      "end_exclusive": 33020710,
      "file": "region1.fa.gz",
      "file_sha256": "8c21ca8f7dc4c384b9de4a1d14db4047cfe56c9f55803b7679331244922b61d3",
      "length": 3216862,
      "ambiguous_bases": 0,
      "range": "202716555-203740402",
      "compressed_sha256": "a9207bb3962533e7339d5f51b1abc6f4fa13f0e4a595a58a0dd05aac44e1bdd8",
      "bytes_downloaded": 1023848,
      "etag": "\"4a7b45fe7ddd60a0356e6c3e7533dfaf-13\"",
      "sequence_sha256": "e4e82afa8316de5a82d0ea2683c0af3529e316406e92c82b943952471e1420a0"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "fc8785ae525b4296fdb0553cb7468a0393d0c8cb49675133ddaeaf9f41505f46",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4303,
      "ambiguous_bases": 0,
      "sequence_sha256": "98dff7e8f5ea250fed8e2246681108b5a41f601b1bf6cfaf10e5852fdb3ccd19",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 3854,
      "ambiguous_bases": 0,
      "sequence_sha256": "2cef26496c0bf16662cdef9d389f83b7f6d3b36e2ca121bdc11cc4632969831b",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13921,
      "ambiguous_bases": 0,
      "sequence_sha256": "01992c136c9a83521820375e678ba57ae315d4732f0b0aca0e4741cdbbdc683f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6585,
      "ambiguous_bases": 0,
      "sequence_sha256": "7b5c4406deb6ef8c5f75009e2c4fc63285569c1aeb53a0ab2f3d33b8a88d4d32",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7231,
      "ambiguous_bases": 0,
      "sequence_sha256": "cc6f0d8038381be24bf9ca88fb045252f06416b01f691c5e414b8982246fa23e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "48106b5386016321e339b0360fa83611eb2965ce1c1936bb4af30b7df6bdc486",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "99b3cd6d053bd6b8c978dd86406a3e2e6d92fff641232f363004a5352b5bde08",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
