{
  "donor": "HG00597",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG00597",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
    "assembly_method_version": "0.19.7",
    "assembly_date": "2024-08",
    "assembly_name": "HG00597_mat_hprc_r2_v1.0.1",
    "source": "hprc",
    "genbank_accession": "GCA_041900265.1",
    "assembly_md5": "s3://human-pangenomics/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz.md5",
    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz"
  },
  "annotation_sha256": "5d89812ad3abcc4b0c6bdcd3ab7803d6e69f0572eed9cc692f0b7cf2da8b43ef",
  "indexes": {
    "assembly_fai": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz.fai",
      "sha256": "b2f89ef6aca0c38bbb407e45318da6dee991c3cb2a653362a23efb75aa390e26"
    },
    "assembly_gzi": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz.gzi",
      "sha256": "308e016dc24bacf9b3e34912624d2d30480808c52cf1a54e7c1ea34a5834706d"
    },
    "assembly_md5": {
      "url": "https://human-pangenomics.s3.amazonaws.com/working/HPRC/HG00597/assemblies/release2/HG00597_mat_hprc_r2_v1.0.1.fa.gz.md5",
      "sha256": "fd997dded8d47b4625fa8c5120959e22b3f5c0628efa1df4ca47f4b787e0eef1"
    }
  },
  "status": "indexed_HLA_spans_staged",
  "regions": [
    {
      "contig": "HG00597#2#CM085784.1",
      "start_0based": 29756261,
      "end_exclusive": 33073668,
      "file": "region1.fa.gz",
      "file_sha256": "8b120caa7bdbae08eee8859d6a3da9c9e307ec0ae38fb9f079f634dbba79cd37",
      "length": 3317407,
      "ambiguous_bases": 0,
      "range": "330769917-331813044",
      "compressed_sha256": "b51e4920d0e994f2bfb08b852f775db2169c960edcfe08db22ea36d318a0594b",
      "bytes_downloaded": 1043128,
      "etag": "\"f3be9851bf2961c38c7f2ea27784518e-14\"",
      "sequence_sha256": "718021e448554a458d82b326b6166ef2e8a7631c7b774f948e4e4bc3bcc96b1e"
    }
  ],
  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3502,
      "ambiguous_bases": 0,
      "sequence_sha256": "b97c51f34a8a9f4982dd5eb1f4230b9807f455ba1caf338e80f8bdf65c677f9f",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "b1f126fc383bc99600ae06719729fe35a5fc1abaa92aaf3633c8d2c758eb9ead",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4081,
      "ambiguous_bases": 0,
      "sequence_sha256": "0828b41e21e3e7c4ec4e5e5df824abe938b373f00a0ebe018f2b05212812d642",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 13822,
      "ambiguous_bases": 0,
      "sequence_sha256": "24e74aa2ef0faa9e4fc4193ce5d65160384c4b8489e312b38f9ad6240cee11a2",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000012",
      "gene": "HLA-DQA1",
      "length": 6597,
      "ambiguous_bases": 0,
      "sequence_sha256": "915d43988e7c7b1a275d447af47a2e13c7411b0e2842f532afffa18802f93d94",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7231,
      "ambiguous_bases": 0,
      "sequence_sha256": "cc6f0d8038381be24bf9ca88fb045252f06416b01f691c5e414b8982246fa23e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9790,
      "ambiguous_bases": 0,
      "sequence_sha256": "48106b5386016321e339b0360fa83611eb2965ce1c1936bb4af30b7df6bdc486",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000010",
      "gene": "HLA-DPB1",
      "length": 11466,
      "ambiguous_bases": 0,
      "sequence_sha256": "99b3cd6d053bd6b8c978dd86406a3e2e6d92fff641232f363004a5352b5bde08",
      "annotation_contig_matches_fai": true
    }
  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
