{
  "donor": "HG00544",
  "haplotype": "2",
  "assembly": {
    "sample_id": "HG00544",
    "haplotype": "2",
    "phasing": "trio",
    "assembly_method": "hifiasm",
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    "assembly_date": "2024-09",
    "assembly_name": "HG00544_mat_hprc_r2_v1.0.1",
    "source": "hprc",
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    "assembly_fai": "s3://human-pangenomics/working/HPRC/HG00544/assemblies/release2/HG00544_mat_hprc_r2_v1.0.1.fa.gz.fai",
    "assembly_gzi": "s3://human-pangenomics/working/HPRC/HG00544/assemblies/release2/HG00544_mat_hprc_r2_v1.0.1.fa.gz.gzi",
    "assembly": "s3://human-pangenomics/working/HPRC/HG00544/assemblies/release2/HG00544_mat_hprc_r2_v1.0.1.fa.gz"
  },
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  "indexes": {
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      "sha256": "0c76d6f984a9d054ec31b60af82498caac112d709feaac8b81cec530a564f50e"
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      "sha256": "a79412a76d29ef47fbded74f96c52ffb1a2ba8faa94f7edb47811eba3e8c1fe6"
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  "status": "indexed_HLA_spans_staged",
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      "contig": "HG00544#2#CM089387.1",
      "start_0based": 29801071,
      "end_exclusive": 33224575,
      "file": "region1.fa.gz",
      "file_sha256": "28fa28a63129983a502c76e27c0ac9d438a7323f49bba9106d3ace9cefa1ac87",
      "length": 3423504,
      "ambiguous_bases": 0,
      "range": "271290697-272353402",
      "compressed_sha256": "869ebd2e2582e0f4592efc6c3c5bdc6c7e568a55b70e04c22c7b02fc0442eb3e",
      "bytes_downloaded": 1062706,
      "etag": "\"53d973ba0b66facf0ac09abd5f3eec44-14\"",
      "sequence_sha256": "2b6109ec70a1fd9424d8d7e12b2532dfababdd6a98b906fb32ef7fa8519ba1b9"
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  "gene_qc": [
    {
      "gene_id": "IAG000001",
      "gene": "HLA-A",
      "length": 3517,
      "ambiguous_bases": 0,
      "sequence_sha256": "e4821f6d1187108951df2642f5e1c99b08c168aa4cebe66c811a78f3ce00552e",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000003",
      "gene": "HLA-C",
      "length": 4304,
      "ambiguous_bases": 0,
      "sequence_sha256": "313274a03a602a882d55aeff30a88ffd80b50631d2bf8ce199cf97715c218a3f",
      "annotation_contig_matches_fai": true
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    {
      "gene_id": "IAG000002",
      "gene": "HLA-B",
      "length": 4094,
      "ambiguous_bases": 0,
      "sequence_sha256": "b89c7d6a41dc1a3b7a316969c49f0ef6b5cdd9393b4fca2dad60e74b23ec1533",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000017",
      "gene": "HLA-DRB1",
      "length": 15396,
      "ambiguous_bases": 0,
      "sequence_sha256": "edd68bd414c5e2c14543c5d30faed0898875d4ca0b391a81f546226d0a08a0c6",
      "annotation_contig_matches_fai": true
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    {
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      "gene": "HLA-DQA1",
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      "ambiguous_bases": 0,
      "sequence_sha256": "74b740ecea794961e73a781c0b55401e8d8eb337df6d75b16389c045fc3811d0",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000014",
      "gene": "HLA-DQB1",
      "length": 7126,
      "ambiguous_bases": 0,
      "sequence_sha256": "192c2241a69d51847a5f6821370a0b981e17f3420b79920fc50cfa080d1971b5",
      "annotation_contig_matches_fai": true
    },
    {
      "gene_id": "IAG000008",
      "gene": "HLA-DPA1",
      "length": 9816,
      "ambiguous_bases": 0,
      "sequence_sha256": "62639ab1341e18f6567b0049f1348a7b37dd6cc9f5cc48609874264d1776ad47",
      "annotation_contig_matches_fai": true
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    {
      "gene_id": "IAG000010",
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      "length": 11466,
      "ambiguous_bases": 0,
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      "annotation_contig_matches_fai": true
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  ],
  "scope": "Annotated HLA spans with 100kb flanks, not a certified complete MHC callable region.",
  "full_assembly_md5_verified": false,
  "local_phasing_and_read_support_validated": false
}
