T1K native/reference baseline release, 2026-10-20

946 actual genotype outputs: 86 donors x 11 active reference arms.
The obsolete original-reference nonAsian60 arm is excluded from genotype/alias exports; historical score/audit rows retain its nonasian label.

collected/cv/typing-*/runs/<donor>/<arm>/calls_genotype.tsv contains original-reference ipd,hprc,hprc_asian,matched_only arms; remaining26 original arms and all genomic/core arms are under collected/genomic/runs/<donor>/<arm>/. COMPLETE.json and fold aliases preserve provenance.

The strongest native baseline is genomic (full genomic IPD3.65). Genomic hprc/hprc_asian/nonasian add flanked panel haplotypes. Genomic_core_* are core-trimmed deduplicated augmentations, skipping exact full-record IPD identities; these are a bundled reference-design diagnostic, not a flank-only or exclusively novel intervention. hprc_asian includes Asian HPRC plus Arab and Saudi content.

TRACK_A_RESULT.json contains all scored calls, per-locus/population summaries, named four-field eligible endpoints and assembly-derived unmatched-copy endpoints. TRACK_INPUT_VERIFICATION verifies1006 full historical tables, including the946 exported active tables, matching completion/table/alias hashes and paired-read manifests. CORE_PROVENANCE_AUDIT reconstructs merged panel provenance and verifies fold exclusion.

No raw reads included. Developmental assembly-based truth; full raw-read truth certification and an untouched confirmatory cohort remain outstanding. Graph and linkage experiments are separate releases and still running at snapshot time.