{
  "status": "complete",
  "donor": "NA18982",
  "fold": 0,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "ba5f972de06d3e104568bccb6ed2a9706b76d2b8d0deec635c438d5a982a2553",
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  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
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  "command": [
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    "exec",
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    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/NA18982/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/NA18982/tmp",
    "--no-home",
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    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
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    "--BAM",
    "baseline/hlala/runs/NA18982/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "NA18982",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/NA18982/work"
  ],
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    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
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    "-R",
    "@RG\\tID:NA18982\\tSM:NA18982",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-NA18982-20261015/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-NA18982-20261015/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792508922.6011465,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "3fc2fa35e1ece6898576cb1656225fd4e1406e85c3244898e285334076e7da3b",
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    "truth_loaded": false
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  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "sha256": "821ca4fc16522f1d5cd8c7111c54870a7feb123382092ef9b6daf53a65f7a5a4",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/NA18982/native/R1_bestguess_G.txt",
      "public_sha256": "821ca4fc16522f1d5cd8c7111c54870a7feb123382092ef9b6daf53a65f7a5a4"
    },
    {
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      "sha256": "994fe2deebd4262d5e8cc2e59f5c2989ace37a66fb10f65e92988c07f0367308",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/NA18982/native/R1_bestguess.txt",
      "public_sha256": "994fe2deebd4262d5e8cc2e59f5c2989ace37a66fb10f65e92988c07f0367308"
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}