{
  "status": "complete",
  "donor": "HG04199",
  "fold": 2,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "386065eb9b145f2643abf0df05232623fbec220e5e8aab3ba2066291ff216531",
  "input_sha256": {
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    "r2": "bf30277f9e27f6ba7c9b2dd90e4e30182415665ae91a6948a0993fa06bea7402"
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  "job_id": "54073120",
  "started": 1792514113.9643848,
  "finished": 1792515653.0143626,
  "prediction_sha256": "b6e545c2fc5db4d97efa36e503faaec75b74b0c9d436abad158eb77374f93e10",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG04199/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG04199/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG04199/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG04199",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG04199/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG04199\\tSM:HG04199",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-remaining26-20261020/HG04199/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-remaining26-20261020/HG04199/reads/r2.fq.gz"
  ],
  "private_source_complete_sha256": "7c3c5a67b73ba7b850f7e5ec5467e25ff99ac24facb2e05d7556a064476dac38",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "source_relative_path": "work/HG04199/hla/R1_bestguess_G.txt",
      "sha256": "b6e545c2fc5db4d97efa36e503faaec75b74b0c9d436abad158eb77374f93e10",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG04199/native/R1_bestguess_G.txt",
      "public_sha256": "b6e545c2fc5db4d97efa36e503faaec75b74b0c9d436abad158eb77374f93e10"
    },
    {
      "source_relative_path": "work/HG04199/hla/R1_bestguess.txt",
      "sha256": "dfe5caedd8739d9ce05104f8fd3932e1407403e95f2e98678966a79ea766b8cf",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG04199/native/R1_bestguess.txt",
      "public_sha256": "dfe5caedd8739d9ce05104f8fd3932e1407403e95f2e98678966a79ea766b8cf"
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}