{
  "status": "complete",
  "donor": "HG04115",
  "fold": 4,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "e04889091cf95c9353a7363b30454cf82a191830cb3420101ef7d47fd239f60a",
  "input_sha256": {
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    "r2": "98bf4ae004d1552430bc78b89e401c47152302e14111b9b6a506d1b4211a033f"
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  "job_id": "54073000",
  "started": 1792513110.5656695,
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  "prediction_sha256": "9c94f4f6e6ada5535ee85d303e2c9111d9d7f037b6a665a90b4bebf6c67f935a",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG04115/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG04115/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG04115/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG04115",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG04115/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG04115\\tSM:HG04115",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG04115/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG04115/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792514886.12154,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "865b86077335ac3503759edfea0523f609735e508d6c4556c216d103df40258a",
    "validator_sha256": "d1f9e5c7b08dbf1a7ee62c1ad472b7a26cacce70e3f2e43e8c097a657c381375",
    "validator_job_id": "54080397",
    "native_log_sha256": "cdc541295c0ce2b0c78c1e6620bb1979bb493a8f48771610a5b27c1199fda226",
    "truth_loaded": false
  },
  "private_source_complete_sha256": "1270b939dfd7538ae00bf04047926ad4d5bf7a716dcaccda53fa6a67e9602a25",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "source_relative_path": "work/HG04115/hla/R1_bestguess_G.txt",
      "sha256": "9c94f4f6e6ada5535ee85d303e2c9111d9d7f037b6a665a90b4bebf6c67f935a",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG04115/native/R1_bestguess_G.txt",
      "public_sha256": "9c94f4f6e6ada5535ee85d303e2c9111d9d7f037b6a665a90b4bebf6c67f935a"
    },
    {
      "source_relative_path": "work/HG04115/hla/R1_bestguess.txt",
      "sha256": "a0b1278669ea1075bff9fa6ab91e195c370701b183db5d32f9aef7fdc81074d1",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG04115/native/R1_bestguess.txt",
      "public_sha256": "a0b1278669ea1075bff9fa6ab91e195c370701b183db5d32f9aef7fdc81074d1"
    }
  ]
}