{
  "status": "complete",
  "donor": "HG03831",
  "fold": 0,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "cbb199cabb7a0869f6c639db344d173cc544c4ab39e6e6d6c7c6aa3addcadd7e",
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  "job_id": "54072929",
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  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
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  "command": [
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    "exec",
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    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG03831/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG03831/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
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    "--BAM",
    "baseline/hlala/runs/HG03831/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG03831",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG03831/work"
  ],
  "mapping_command": [
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    "--cleanenv",
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    "--bind",
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    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG03831\\tSM:HG03831",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG03831/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG03831/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792514497.5004573,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "199737a7733e77f418b19fb2027af34a495b84be89359774e2271614980ae56d",
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    "validator_job_id": "54080170",
    "native_log_sha256": "12caad9202fe76d24676bce8fba2d7ef61ff7d436489dac79a99fe593cb329c3",
    "truth_loaded": false
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  "private_source_complete_sha256": "8d17f9f0cc040f970f00b3b67c6c91cfa309123764de1f5b35f701048f1042aa",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "sha256": "65dcdadd1925aba82daf1f1f56f578a7da6c5c89080279ce6d3cd27d23beb14d",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG03831/native/R1_bestguess_G.txt",
      "public_sha256": "65dcdadd1925aba82daf1f1f56f578a7da6c5c89080279ce6d3cd27d23beb14d"
    },
    {
      "source_relative_path": "work/HG03831/hla/R1_bestguess.txt",
      "sha256": "3f8c186813a7c3ceafa39c880e1dc5e384c02924f0529eacdd9960c187e94007",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG03831/native/R1_bestguess.txt",
      "public_sha256": "3f8c186813a7c3ceafa39c880e1dc5e384c02924f0529eacdd9960c187e94007"
    }
  ]
}