{
  "status": "complete",
  "donor": "HG03704",
  "fold": 2,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "d84b1773374b0a2807fa6bc432391ce205b645c0ce8ebf130f89836c44082f29",
  "input_sha256": {
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    "r2": "3c42fb51bfb96e2a8153c3e642f1a5a1ee3d9d86413ab2e58f98c3ad824f3a0e"
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  "job_id": "54072920",
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  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "command": [
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    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG03704/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG03704/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG03704/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG03704",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG03704/work"
  ],
  "mapping_command": [
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    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG03704\\tSM:HG03704",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG03704/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG03704/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792513640.5972636,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "9baff5f8025717e16ee296ae375ee20941c6f6df898d7e4fd5150d4263083703",
    "validator_sha256": "d1f9e5c7b08dbf1a7ee62c1ad472b7a26cacce70e3f2e43e8c097a657c381375",
    "validator_job_id": "54079945",
    "native_log_sha256": "cd6e9ac1d6cb19df0d2d962978f8c48df2ab509d434830fd06840080d8120d2a",
    "truth_loaded": false
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  "private_source_complete_sha256": "d9c0448848cb06d1efdf980d82a31dd25f2df4eb4388d11ef678e9d031a102f9",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "source_relative_path": "work/HG03704/hla/R1_bestguess_G.txt",
      "sha256": "5d4c6278b0071367a0f5a537223b7377e5951355c445115aa3475fbfdcad2a5d",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG03704/native/R1_bestguess_G.txt",
      "public_sha256": "5d4c6278b0071367a0f5a537223b7377e5951355c445115aa3475fbfdcad2a5d"
    },
    {
      "source_relative_path": "work/HG03704/hla/R1_bestguess.txt",
      "sha256": "8e41e1af7cca7cc415cfab8aa1401715d722a5283abb37e044e50fcc0ed291ea",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG03704/native/R1_bestguess.txt",
      "public_sha256": "8e41e1af7cca7cc415cfab8aa1401715d722a5283abb37e044e50fcc0ed291ea"
    }
  ]
}