{
  "status": "complete",
  "donor": "HG00658",
  "fold": 3,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "c97bac41ac4c9d59a6f5cf17a052605f1f21ec41e7ca1c0034842974ae310298",
  "input_sha256": {
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    "r2": "18892d160faace5ce6fea74d9458411924c40c201ecab4ad72f33fe58359dcd7"
  },
  "job_id": "54072850",
  "started": 1792507488.1866229,
  "finished": 1792510010.3469834,
  "prediction_sha256": "3ca704e8d98a818ee70178d21df43a71208b0fd33974527905be9aaaf8566a46",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG00658/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG00658/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG00658/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG00658",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG00658/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG00658\\tSM:HG00658",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-control-HG00658-v1/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-control-HG00658-v1/reads/r2.fq.gz"
  ],
  "private_source_complete_sha256": "0fff37de73ad55e42bdf723f2f9a7b9f7543cad20d83f5eb0ca37daabcfae35b",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "source_relative_path": "work/HG00658/hla/R1_bestguess_G.txt",
      "sha256": "3ca704e8d98a818ee70178d21df43a71208b0fd33974527905be9aaaf8566a46",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG00658/native/R1_bestguess_G.txt",
      "public_sha256": "3ca704e8d98a818ee70178d21df43a71208b0fd33974527905be9aaaf8566a46"
    },
    {
      "source_relative_path": "work/HG00658/hla/R1_bestguess.txt",
      "sha256": "c665543dd7a73d03dd28f25cd0b68bbf1a69047e800dcf604ea4ea5014a6679c",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG00658/native/R1_bestguess.txt",
      "public_sha256": "c665543dd7a73d03dd28f25cd0b68bbf1a69047e800dcf604ea4ea5014a6679c"
    }
  ]
}