{
  "status": "complete",
  "donor": "HG00609",
  "fold": 2,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "2e030bb5f1e8101d28bf7a1ad85c4cfa63af612400c0842977d8597681fabcb1",
  "input_sha256": {
    "r1": "76b6cbae9143bbaeeb46b4fc00474f132762982cff401d78c983128ba21a077a",
    "r2": "4c80c8ef78ac0c2e8dfa70ae218b457cb9d02fe161cfb0c99af2dcccd21e8f18"
  },
  "job_id": "54072859",
  "started": 1792507738.7258885,
  "finished": 1792510513.6115384,
  "prediction_sha256": "de9db54cf5e24391d65f4b4c2d3614b246188975ff2642f0b964f43ebd511dbd",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
  "container_sha256": "83b5a95cacfbdd81d6c4d8b34830ffed51511cc5202a5dde8295a08557a1c546",
  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG00609/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG00609/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG00609/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG00609",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG00609/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG00609\\tSM:HG00609",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG00609/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG00609/reads/r2.fq.gz"
  ],
  "private_source_complete_sha256": "0d6d4cfa2fadb5d22b28947eeddd2fd47789eadb67013496d277aa5a03dd8be4",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
    {
      "source_relative_path": "work/HG00609/hla/R1_bestguess_G.txt",
      "sha256": "de9db54cf5e24391d65f4b4c2d3614b246188975ff2642f0b964f43ebd511dbd",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG00609/native/R1_bestguess_G.txt",
      "public_sha256": "de9db54cf5e24391d65f4b4c2d3614b246188975ff2642f0b964f43ebd511dbd"
    },
    {
      "source_relative_path": "work/HG00609/hla/R1_bestguess.txt",
      "sha256": "ab3b64644921ba60e06df6339305db510a5a88a790afdc24d0d84817e58bf1f4",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG00609/native/R1_bestguess.txt",
      "public_sha256": "ab3b64644921ba60e06df6339305db510a5a88a790afdc24d0d84817e58bf1f4"
    }
  ]
}