{
  "status": "complete",
  "donor": "HG00423",
  "fold": 4,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "fa0c0e9642f0ec9acab2214d438f2d5ccc2bb5ea40377cba9baf13bacf186084",
  "input_sha256": {
    "r1": "5699971abda62be9e9693ff59e7cf9926125a7024e984de7132f01c95e87e47c",
    "r2": "15e308c0a40b09c5fc96737eb2fdeeb5096346121f43bc8855ae28ec0524419a"
  },
  "job_id": "54063916",
  "started": 1792494705.255834,
  "finished": 1792501553.8347096,
  "prediction_sha256": "52df3674d744511af656d29a9ab7f16a75062c501e24f10519be7f3005c9fd4f",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG00423/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG00423/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG00423/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG00423",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG00423/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG00423\\tSM:HG00423",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-asian-seven-20261015/HG00423/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-asian-seven-20261015/HG00423/reads/r2.fq.gz"
  ],
  "private_source_complete_sha256": "03e4d33acaadc801c7abfad1b60e1b2fa75ccacd1729f972adeccf2f6784a49f",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
    {
      "source_relative_path": "work/HG00423/hla/R1_bestguess_G.txt",
      "sha256": "52df3674d744511af656d29a9ab7f16a75062c501e24f10519be7f3005c9fd4f",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG00423/native/R1_bestguess_G.txt",
      "public_sha256": "52df3674d744511af656d29a9ab7f16a75062c501e24f10519be7f3005c9fd4f"
    },
    {
      "source_relative_path": "work/HG00423/hla/R1_bestguess.txt",
      "sha256": "cc1afa17ef61ba140d696cdd5a0c80afae050e4a0bd4c86340795b4bce4c0978",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG00423/native/R1_bestguess.txt",
      "public_sha256": "cc1afa17ef61ba140d696cdd5a0c80afae050e4a0bd4c86340795b4bce4c0978"
    }
  ]
}