{
  "status": "complete",
  "donor": "HG00558",
  "fold": 3,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "e7661bda50cddbafd3c5d3f2319295e5a8e391bd92947f9481148758b13b2d43",
  "input_sha256": {
    "r1": "0d673c7cfdeb03c0293162d259cf07799ac65a40a59caf4d572e3a5d69e552b2",
    "r2": "4845df35f7d08bf29244fbbc36af09dfeb876b8def68184f6b6d4c855427877f"
  },
  "job_id": "54072856",
  "started": 1792507741.731919,
  "finished": 1792509281.0378747,
  "prediction_sha256": "a1d7bf0c2bac1916987bae19983f711a60af34451c7ba907ea97b6adc69460fa",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
  "container_sha256": "83b5a95cacfbdd81d6c4d8b34830ffed51511cc5202a5dde8295a08557a1c546",
  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG00558/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG00558/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG00558/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG00558",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG00558/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG00558\\tSM:HG00558",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG00558/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG00558/reads/r2.fq.gz"
  ],
  "private_source_complete_sha256": "cc65500ee2c08ff91f7df579a7b5477245b13cb33388a07c4e96c70eba93e7d2",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
    {
      "source_relative_path": "work/HG00558/hla/R1_bestguess_G.txt",
      "sha256": "a1d7bf0c2bac1916987bae19983f711a60af34451c7ba907ea97b6adc69460fa",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG00558/native/R1_bestguess_G.txt",
      "public_sha256": "a1d7bf0c2bac1916987bae19983f711a60af34451c7ba907ea97b6adc69460fa"
    },
    {
      "source_relative_path": "work/HG00558/hla/R1_bestguess.txt",
      "sha256": "e9025ed0e99d98565b3d2f1f3341c33d5ad1ad3b4e9e5afe2ac36b4101386ca7",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG00558/native/R1_bestguess.txt",
      "public_sha256": "e9025ed0e99d98565b3d2f1f3341c33d5ad1ad3b4e9e5afe2ac36b4101386ca7"
    }
  ]
}