{
  "status": "complete",
  "donor": "HG04184",
  "fold": 4,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "a239c6c53d50fa2d8892471413270c239f3742d8f28163000df14687736615a1",
  "input_sha256": {
    "r1": "82370d273f720ab2b6d51952ee1bc0cecad66bad92aebe7ab9cdfeb47e04db3f",
    "r2": "47d4538899e23b3421c722742c6b10c153dea6163f9bf74d730adcb5a6d20377"
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  "job_id": "54073116",
  "started": 1792514123.1904747,
  "finished": 1792515904.6478286,
  "prediction_sha256": "7bfbd56f9aeedc027d5b1f158c1b0b958d587ea7c06d45d8f6c51d788491656d",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG04184/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG04184/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG04184/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG04184",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG04184/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG04184\\tSM:HG04184",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-remaining26-20261020/HG04184/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-remaining26-20261020/HG04184/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792516406.0339305,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "b71997535f9b8fead44bae6c2586c67099ef50e567e9bbd74182dd9d62b16c47",
    "validator_sha256": "d1f9e5c7b08dbf1a7ee62c1ad472b7a26cacce70e3f2e43e8c097a657c381375",
    "validator_job_id": "54081191",
    "native_log_sha256": "f550d3d88f94376b817926f35f776a9688effc5c1c078329599d738fa5db8674",
    "truth_loaded": false
  },
  "private_source_complete_sha256": "face38b9f1b36b4374ef3f3a1c3849b255493bdf819de889e49cc90c5785979d",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "source_relative_path": "work/HG04184/hla/R1_bestguess_G.txt",
      "sha256": "7bfbd56f9aeedc027d5b1f158c1b0b958d587ea7c06d45d8f6c51d788491656d",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG04184/native/R1_bestguess_G.txt",
      "public_sha256": "7bfbd56f9aeedc027d5b1f158c1b0b958d587ea7c06d45d8f6c51d788491656d"
    },
    {
      "source_relative_path": "work/HG04184/hla/R1_bestguess.txt",
      "sha256": "a389f566d0b631ab84d60b00644143575765d5f84165ca95233b94b997848f99",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG04184/native/R1_bestguess.txt",
      "public_sha256": "a389f566d0b631ab84d60b00644143575765d5f84165ca95233b94b997848f99"
    }
  ]
}