{
  "status": "complete",
  "donor": "HG03784",
  "fold": 0,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "370978ad7357280697f3e8c85abea960b78fd52de1f7e58384f0911b67c23098",
  "input_sha256": {
    "r1": "b4368eee87ac83a437a1fbe462e10e97d630fe2ef52d622bca6aa15506a4268d",
    "r2": "dcce6342e2d456231e30d62fabc0f11e664d8a380ac8cb2129cea2e26e16772a"
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  "job_id": "54072924",
  "started": 1792512391.3848455,
  "finished": 1792514841.8784196,
  "prediction_sha256": "6e2085ab6e6bc90681d3dd41c5cea4cd896ef0adb1138f6d7ec3a93b26a2ff21",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG03784/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG03784/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG03784/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG03784",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG03784/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG03784\\tSM:HG03784",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG03784/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG03784/reads/r2.fq.gz"
  ],
  "private_source_complete_sha256": "a67fe0c2e8cd525a84b804cc8d81a7117a539c24b0c7ba08aeab1307155a3978",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
    {
      "source_relative_path": "work/HG03784/hla/R1_bestguess_G.txt",
      "sha256": "6e2085ab6e6bc90681d3dd41c5cea4cd896ef0adb1138f6d7ec3a93b26a2ff21",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG03784/native/R1_bestguess_G.txt",
      "public_sha256": "6e2085ab6e6bc90681d3dd41c5cea4cd896ef0adb1138f6d7ec3a93b26a2ff21"
    },
    {
      "source_relative_path": "work/HG03784/hla/R1_bestguess.txt",
      "sha256": "86d404c573346dc664f86172b40b4652265c176611b16aad331bda8f01a2441f",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG03784/native/R1_bestguess.txt",
      "public_sha256": "86d404c573346dc664f86172b40b4652265c176611b16aad331bda8f01a2441f"
    }
  ]
}