{
  "status": "complete",
  "donor": "HG02523",
  "fold": 3,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "b115ebc9c8d62e7a4499dd56dd3c388c34bbd33f0cf05ff6c74ea28bbf0b8597",
  "input_sha256": {
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    "r2": "6d1b76da284d6815b44669b9855dad8228270482f481736ed143f3e1c8030f80"
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  "job_id": "54072903",
  "started": 1792510495.70407,
  "finished": 1792512308.177717,
  "prediction_sha256": "36dde90c21990ed4e2d5a9eb5c1ad2d5a3371682fb8cacf227ebf236b25d6528",
  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
  "grch38_index_pin_sha256": "69fa34e81ecd2fbef066cbdc008f0dadaa9e2e7c97b953e976b6098622248476",
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  "graph_archive_sha256": "8e9c440fff78ac0c43172ecdb39a9b6f2e49bc0986ad5b7719435f9a533a3d38",
  "command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG02523/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG02523/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
    "/usr/local/bin/picard",
    "--BAM",
    "baseline/hlala/runs/HG02523/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG02523",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG02523/work"
  ],
  "mapping_command": [
    "singularity",
    "exec",
    "--cleanenv",
    "--no-home",
    "--bind",
    "runtime:runtime,benchmark:benchmark,baseline:baseline",
    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
    "8",
    "-R",
    "@RG\\tID:HG02523\\tSM:HG02523",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02523/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02523/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792512509.6666498,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele B*07:05:01;B*07:06')",
    "source_failure_sha256": "70956c3d165560e89ff712f089265d8bceaa51feee6af56da8e9e921f65163e4",
    "validator_sha256": "d1f9e5c7b08dbf1a7ee62c1ad472b7a26cacce70e3f2e43e8c097a657c381375",
    "validator_job_id": "54079383",
    "native_log_sha256": "0a01b4ae471da65336550eae80c1b9339efcb736b6379de1ce6f565737fbe9d7",
    "truth_loaded": false
  },
  "private_source_complete_sha256": "df09fb7a45bcbdb8470c005ec49facc6a68db508c03082eb96adf50896bd7b8e",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "source_relative_path": "work/HG02523/hla/R1_bestguess_G.txt",
      "sha256": "36dde90c21990ed4e2d5a9eb5c1ad2d5a3371682fb8cacf227ebf236b25d6528",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG02523/native/R1_bestguess_G.txt",
      "public_sha256": "36dde90c21990ed4e2d5a9eb5c1ad2d5a3371682fb8cacf227ebf236b25d6528"
    },
    {
      "source_relative_path": "work/HG02523/hla/R1_bestguess.txt",
      "sha256": "d9ee1d9493bbe0061bdf3606dc348e06d0eb8ed1ac5b4cd350b3bb5161ff1543",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG02523/native/R1_bestguess.txt",
      "public_sha256": "d9ee1d9493bbe0061bdf3606dc348e06d0eb8ed1ac5b4cd350b3bb5161ff1543"
    }
  ]
}