{
  "status": "complete",
  "donor": "HG02178",
  "fold": 2,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
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  "command": [
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    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG02178/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG02178/tmp",
    "--no-home",
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    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
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    "--BAM",
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    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG02178",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG02178/work"
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    "--cleanenv",
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    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
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    "-R",
    "@RG\\tID:HG02178\\tSM:HG02178",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02178/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02178/reads/r2.fq.gz"
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  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "7bceed6039e2bc14cf2470208df00d523dc241a1b1caf7d839fcc88b86cd0519",
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  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "sha256": "597b7c97835a5830eb533b4e597606a09c6e693fb3ae554c7e1cd57b8e9dab0f",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG02178/native/R1_bestguess_G.txt",
      "public_sha256": "597b7c97835a5830eb533b4e597606a09c6e693fb3ae554c7e1cd57b8e9dab0f"
    },
    {
      "source_relative_path": "work/HG02178/hla/R1_bestguess.txt",
      "sha256": "b230e16cd353ca48707caa587e1a0173b98085d30789aab93c1ed5d34538a768",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG02178/native/R1_bestguess.txt",
      "public_sha256": "b230e16cd353ca48707caa587e1a0173b98085d30789aab93c1ed5d34538a768"
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}