{
  "status": "complete",
  "donor": "HG02080",
  "fold": 0,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
  "driver_sha256": "f311dd6967b5d8cbd32bd85e969ad59ee9b6d72b93b7041af71d38fc72778e1b",
  "pairs_receipt_sha256": "a7910f808a5f0c3b824eaa3d962e39b8bde64b682e9bc1484a1872b6acba55fb",
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  "job_id": "54072879",
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  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
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  "command": [
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    "exec",
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    "--env",
    "PATH=/usr/local/bin:/usr/bin:/bin,TMPDIR=baseline/hlala/runs/HG02080/tmp,JAVA_TOOL_OPTIONS=-Djava.io.tmpdir=baseline/hlala/runs/HG02080/tmp",
    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
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    "--BAM",
    "baseline/hlala/runs/HG02080/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG02080",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG02080/work"
  ],
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    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
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    "-R",
    "@RG\\tID:HG02080\\tSM:HG02080",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02080/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02080/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792510987.8874116,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele DPA1*02:01:01;DPA1*02:01:08')",
    "source_failure_sha256": "f9e2c2eb03186f154bcd19cb0d8d47da348ff48a166cdc31ec51b9fe6c8fac3a",
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    "native_log_sha256": "7a90970f5c12d79764ec2cb4aef7e34427bd765b846f0e693c7e507d92e4391f",
    "truth_loaded": false
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  "private_source_complete_sha256": "13b3fbfb34b7ec26bca82a9478356dfc380ea0b9d951c891b7957b45bbd52fbc",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "sha256": "db9cee0e7569ecf56bf67bc4333c70823fcaf12f7caf11ba7fb9c17d76e3d464",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG02080/native/R1_bestguess_G.txt",
      "public_sha256": "db9cee0e7569ecf56bf67bc4333c70823fcaf12f7caf11ba7fb9c17d76e3d464"
    },
    {
      "source_relative_path": "work/HG02080/hla/R1_bestguess.txt",
      "sha256": "8fd25b40bc97a994c33f97e5450d1fb57cb051b30975757562fe7832e7d1b5d3",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG02080/native/R1_bestguess.txt",
      "public_sha256": "8fd25b40bc97a994c33f97e5450d1fb57cb051b30975757562fe7832e7d1b5d3"
    }
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}