{
  "status": "complete",
  "donor": "HG02040",
  "fold": 2,
  "scope": "HLA*LA1.0.4 native historical PRG; nomenclature harmonization required; not IPD3.65 matched",
  "truth_loaded": false,
  "plan_sha256": "9a514cf3bada880828b525f8b642a7a4e01a4902b6153a4c746b14d00ab11322",
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  "pairs_receipt_sha256": "c82adb879572e1fdfc091b5cd7b69b1d98865ae7be96f55b8bc03ac10575a7d3",
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  "job_id": "54072868",
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  "graph_index_pin_sha256": "44f94075a543e23de5f287dbdebdf0efb8bd4d6e63f25e7581a5cadb964e99ee",
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  "command": [
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    "exec",
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    "--no-home",
    "--bind",
    "baseline:baseline,baseline/graphs:/usr/local/opt/hla-la/src/../graphs",
    "benchmark/hlala-baseline-20261018/hla-la.sif",
    "/usr/local/bin/HLA-LA.pl",
    "--picard_sam2fastq_bin",
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    "--BAM",
    "baseline/hlala/runs/HG02040/same_pairs.bam",
    "--graph",
    "PRG_MHC_GRCh38_withIMGT",
    "--sampleID",
    "HG02040",
    "--maxThreads",
    "8",
    "--workingDir",
    "baseline/hlala/runs/HG02040/work"
  ],
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    "--cleanenv",
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    "--bind",
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    "project-runtime/containers/ubuntu24.sif",
    "runtime/mm/envs/asian50-spechla/bin/bwa",
    "mem",
    "-t",
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    "-R",
    "@RG\\tID:HG02040\\tSM:HG02040",
    "benchmark/japanese-fingerprint-alignment-runtime-v1/index/reference.fa",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02040/reads/r1.fq.gz",
    "benchmark/MHC-recruitment-expansion41-20261018/HG02040/reads/r2.fq.gz"
  ],
  "analysis_finalized_at": 1792510385.879873,
  "validation_recovery": {
    "reason": "valid_named_allele_alternatives",
    "original_worker_status": "failed_after_native_exit0",
    "original_error": "AssertionError('Malformed allele B*07:05:01;B*07:06')",
    "source_failure_sha256": "ceff223e3795596955ebee74c92c8ff66476ab16863adcc2622280fcf119e10c",
    "validator_sha256": "d1f9e5c7b08dbf1a7ee62c1ad472b7a26cacce70e3f2e43e8c097a657c381375",
    "validator_job_id": "54078118",
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    "truth_loaded": false
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  "private_source_complete_sha256": "4db7fef286492a919396d8d8387976eefd86280c976cc4506fe85b389c7b96b7",
  "command_path_policy": "Commands are path-normalized reference templates; runtime/ and benchmark/ inputs are not redistributed.",
  "native_tables": [
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      "sha256": "a4974dd6731fc6a77e3664c90dd7d139ec721a63b5b5bac121d2d8f387181de6",
      "run_receipt_hash_bound": true,
      "public_path": "methods/hlala/donors/HG02040/native/R1_bestguess_G.txt",
      "public_sha256": "a4974dd6731fc6a77e3664c90dd7d139ec721a63b5b5bac121d2d8f387181de6"
    },
    {
      "source_relative_path": "work/HG02040/hla/R1_bestguess.txt",
      "sha256": "a3d45021ad077f351abb2bb675f30541df60f6b8a7e354a446078e4b6ec04dd7",
      "run_receipt_hash_bound": false,
      "public_path": "methods/hlala/donors/HG02040/native/R1_bestguess.txt",
      "public_sha256": "a3d45021ad077f351abb2bb675f30541df60f6b8a7e354a446078e4b6ec04dd7"
    }
  ]
}