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"unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 56, "insufficient_sequence_pair_gap": 4 } }, "DogoHLA/hprc_asian/E1": { "donors": 60, "eligible": 58, "correct": 51, "called_on_eligible": 58, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 57, "coarse_anchor_control": 3 } }, "DogoHLA/hprc_asian/E2": { "donors": 60, "eligible": 58, "correct": 51, "called_on_eligible": 58, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 60 } }, "DogoHLA/hprc_asian/E3": { "donors": 60, "eligible": 58, "correct": 51, "called_on_eligible": 58, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 57, "insufficient_sequence_pair_gap": 3 } }, "DogoHLA_genomic/hprc/E1": { "donors": 86, "eligible": 84, "correct": 77, "called_on_eligible": 84, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 12, "sequence_pair_selected": 70, "coarse_anchor_control": 3, "tied_sequence_pairs": 1 } }, "DogoHLA_genomic/hprc/E2": { "donors": 86, "eligible": 84, "correct": 80, "called_on_eligible": 84, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 12, "sequence_pair_selected": 73, "tied_sequence_pairs": 1 } }, "DogoHLA_genomic/hprc/E3": { "donors": 86, "eligible": 84, "correct": 73, "called_on_eligible": 84, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 79, "insufficient_sequence_pair_gap": 7 } }, "DogoHLA_genomic/hprc_asian/E1": { "donors": 86, "eligible": 84, "correct": 79, "called_on_eligible": 84, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 20, "sequence_pair_selected": 62, "coarse_anchor_control": 3, "tied_sequence_pairs": 1 } }, "DogoHLA_genomic/hprc_asian/E2": { "donors": 86, "eligible": 84, "correct": 82, "called_on_eligible": 84, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { 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"eligible": 75, "correct": 51, "called_on_eligible": 68, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 16, "sequence_pair_selected": 57, "coarse_anchor_control": 10, "native_four_field_unresolved_control": 3 } }, "DogoHLA_genomic/hprc_asian/E2": { "donors": 86, "eligible": 75, "correct": 56, "called_on_eligible": 68, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 16, "sequence_pair_selected": 70 } }, "DogoHLA_genomic/hprc_asian/E3": { "donors": 86, "eligible": 75, "correct": 57, "called_on_eligible": 72, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 68, "insufficient_sequence_pair_gap": 14, "insufficient_within_gene_discrimination": 3, "insufficient_distinct_copy_support": 1 } }, "T1K/genomic": { "donors": 86, "eligible": 75, "correct": 67, "called_on_eligible": 71, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "native": 86 } }, 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"unnamed_recovered": 0, "decision_counts": { "native": 86 } }, "T1K/hprc": { "donors": 86, "eligible": 75, "correct": 45, "called_on_eligible": 70, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "native": 86 } }, "T1K/hprc_asian": { "donors": 86, "eligible": 75, "correct": 51, "called_on_eligible": 71, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "native": 86 } }, "T1K/ipd": { "donors": 86, "eligible": 75, "correct": 20, "called_on_eligible": 56, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "native": 86 } }, "T1K/matched_only": { "donors": 86, "eligible": 75, "correct": 52, "called_on_eligible": 74, "unnamed": 8, "unnamed_recovered": 0, "decision_counts": { "native": 86 } }, "T1K/nonasian": { "donors": 60, "eligible": 53, "correct": 8, "called_on_eligible": 39, "unnamed": 4, "unnamed_recovered": 0, "decision_counts": { "native": 60 } } }, "C": { "DogoHLA/hprc/E1": { "donors": 60, "eligible": 57, "correct": 40, "called_on_eligible": 50, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 51, "insufficient_sequence_pair_gap": 4, "coarse_anchor_control": 3, "native_four_field_unresolved_control": 2 } }, "DogoHLA/hprc/E2": { "donors": 60, "eligible": 57, "correct": 39, "called_on_eligible": 47, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 56, "insufficient_sequence_pair_gap": 4 } }, "DogoHLA/hprc/E3": { "donors": 60, "eligible": 57, "correct": 44, "called_on_eligible": 52, "unnamed": 2, "unnamed_recovered": 0, "decision_counts": { "sequence_pair_selected": 59, "insufficient_sequence_pair_gap": 1 } }, "DogoHLA/hprc_asian/E1": { "donors": 60, "eligible": 57, "correct": 41, "called_on_eligible": 48, "unnamed": 2, "unnamed_recovered": 1, "decision_counts": { "sequence_pair_selected": 48, "insufficient_sequence_pair_gap": 6, "coarse_anchor_control": 5, "native_four_field_unresolved_control": 1 } }, "DogoHLA/hprc_asian/E2": { "donors": 60, "eligible": 57, "correct": 38, "called_on_eligible": 44, "unnamed": 2, "unnamed_recovered": 1, "decision_counts": { "sequence_pair_selected": 54, "insufficient_sequence_pair_gap": 6 } }, "DogoHLA/hprc_asian/E3": { "donors": 60, "eligible": 57, "correct": 49, "called_on_eligible": 57, "unnamed": 2, "unnamed_recovered": 1, "decision_counts": { "sequence_pair_selected": 60 } }, "DogoHLA_genomic/hprc/E1": { "donors": 86, "eligible": 81, "correct": 63, "called_on_eligible": 74, "unnamed": 3, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 13, "sequence_pair_selected": 66, "coarse_anchor_control": 5, "native_four_field_unresolved_control": 2 } }, "DogoHLA_genomic/hprc/E2": { "donors": 86, "eligible": 81, "correct": 61, "called_on_eligible": 70, "unnamed": 3, "unnamed_recovered": 0, "decision_counts": { "insufficient_sequence_pair_gap": 13, "sequence_pair_selected": 73 } }, "DogoHLA_genomic/hprc/E3": { "donors": 86, "eligible": 81, "correct": 67, "called_on_eligible": 77, "unnamed": 3, 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Comparison to genomic-only baseline is competitive, not a topology-only ablation.", "Native fallback and graph retrieval are mixed; decision counts identify this conditional behavior.", "Developmental/exposed cohort; no new raw-read truth certification.", "Available completed outputs, not all planned donors; missing runs are distinct from no-calls.", "Descriptive mode comparisons; no selection of a winning mode or inferential p-values." ] }