{
  "source": "/benchmark/pangenome-reference-cv-20261014/inference-expansion41/runs/HG03874/hprc",
  "source_complete_sha256": "96be5ec71efcb659bfb0c319c2a9f8ca0d36a921bbc45b76cc1eb316247fb920",
  "source_evidence_sha256": "998970155b09f9c857aeca8f0b0ee8b24ea61cf03b01a700324ce86d7a9a7017",
  "code_sha256": {
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    "build_graph.py": "170765c3d0c53b3fc5bc9973016a17195937b9798e191dbacb08db124b94261a",
    "context_fragment.py": "098c19433935309ed05a2e3534ed514660c7af34baa3ce51928c3e6bca5ea6d6",
    "context_inference.py": "cb6007033d7d7320a26d8dc57283438385550949666e64e844363b159b66f7a0",
    "context_read_store.py": "6226eb83e37af78fcea04e17529f7cca8cd8e8b9e470b8ea5b0f5ad8a396eeee",
    "context_runtime_identity.py": "6d132df334e8ff31aeeb724808ed58aa8b7b7c264c97156ef89e9bdf52f115fb",
    "cv_references.py": "db687df88f0bc4e227c9b73242918629b1127d8ac80271c59056d703830ab126",
    "evidence_io.py": "14495b5ddbe02f4514f886424a4c75aa42ca5102fb78c1122ec903858a8b2289",
    "fragment_support.py": "bbfd8943563acccbb6b5ebda723d4c7cef44ef88a2dd508439cbae28cf52856f",
    "join_evidence.py": "e9e9c5ac6bcb0197436fd6403286595814f669261e5d4caf8069a11b467a4930",
    "joint_model.py": "c2279fd29e12f215e23fdd148fe7a6794b70fe8221d639c69c55e1ae6f87b5e4",
    "run_context_evidence.py": "3e99c6f7b95d4df77ae2598a59860caeb5adf059ce1be60f6a244053b0783d6a",
    "run_context_evidence_disk_v3.py": "779ad5b3833dbdfa074778515bb89dc789a857606204f378225ff888e4a94a9d",
    "run_context_inference.py": "3072b63da055bbd819ff57280e39431d2da611824059458336c0264062f3d6f5",
    "run_context_linear.py": "33ef894cf3a287ec3c52a32da50d50ea3c99f87446ce7c27144c5a6e573d2203",
    "score_native.py": "531340bcca991cd2fac6f563ae557a2882e9f75d5b3d4cd101161dc58a25eee2",
    "sequence_identity.py": "0152f515c50ce66f5dc58ad1442072b0093c247e4eca98949501d869a44cb721",
    "t1k_evidence.py": "b79c8cdf6708bf8f0401adb4a0aa9a73b8251da3543b5d6343382ac02a06b9b6",
    "test_context_inference.py": "2e2e6a2ae2ef5caa3bc2fff812656745f877b6b5100de6050f39babeb0c7ae89"
  },
  "script_sha256": "f1080946e5a29b4b384e0db73a18ca3c6398b41112779c240b85cc69a775285e",
  "native_table_sha256": "0bb2c5b22b483fb7d620fb111d1b542fbae58381be79abcb893fb9c85d04bf06",
  "aliases_sha256": "5ddfe098780254d53dc48002be6e9fae86270ccdd4bfa0cde2a0942d6dc4543a",
  "job_id": "54051169",
  "graph_sequences_absent_from_native_catalogue": 0,
  "native_panel_aliases_retained": 495,
  "truth_loaded": false,
  "intervention": "Drop non-IPD-prefixed candidate placements before normalization; retain native panel aliases",
  "limitations": [
    "Existing original.fa/flanked reference configuration, not a full-genomic-IPD rebase.",
    "Tests incremental graph retrieval over native retrieval, not all possible graph algorithms.",
    "Candidate availability is held equal; retrieved candidates may differ by design.",
    "Same scorer, fallback and decision thresholds as original union replay."
  ],
  "retrieval_counts": {
    "fragments": 681498,
    "native_supported_fragments": 15212,
    "graph_supported_fragments": 14654,
    "graph_only_fragments": 3860
  },
  "status": "native_proposal_ablation_complete",
  "output_sha256": {
    "E1/calls.json": "ba1608237c380249016ec92de796b92f4bc55d574ff7c963802e6b5407519464",
    "E1/decisions.json": "9fae48a5f3244833b3efa93aa778d110cc3d5b3975d7a437d43d055462813763",
    "E1/sequence_calls.json": "7ebff0f4b48bbbf1cbfc2ecf6cbca4325cec60c824c2e9e0c5c24840fa1310c6",
    "E2/calls.json": "98903ab0b188e366c293c24d2ab14a2033da8297b28e24c8c0d1572ba63eedf0",
    "E2/decisions.json": "d20acd873b16699ab8d99e02faea053367fa9b8de0bbdf1872500fe7c9694772",
    "E2/sequence_calls.json": "5b4dbbdbaf4b3c31e07eef516a494bdabd6257c26f1970a1d8dc0fc0657e9f54",
    "E3/calls.json": "df3450bd6499a8106cb5758549696750a6b1f11787202f658f2f078f3558747e",
    "E3/decisions.json": "30cdbe245b5098c0fed72daa9f1404e0b5d4d1eb1fb183af5d7d7c7cf0f680a2",
    "E3/sequence_calls.json": "4c43ceff327eecae689d44e4f35facddf09a3c849869e2e26a0929df3bf506f6"
  }
}