{
  "source": "/benchmark/pangenome-reference-cv-20261014/inference-expansion41/runs/HG00558/hprc",
  "source_complete_sha256": "5a04596b3585449e7c233581f06523af748e551e78e00afa72ca0ac5407c1896",
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    "context_fragment.py": "098c19433935309ed05a2e3534ed514660c7af34baa3ce51928c3e6bca5ea6d6",
    "context_inference.py": "cb6007033d7d7320a26d8dc57283438385550949666e64e844363b159b66f7a0",
    "context_read_store.py": "6226eb83e37af78fcea04e17529f7cca8cd8e8b9e470b8ea5b0f5ad8a396eeee",
    "context_runtime_identity.py": "6d132df334e8ff31aeeb724808ed58aa8b7b7c264c97156ef89e9bdf52f115fb",
    "cv_references.py": "db687df88f0bc4e227c9b73242918629b1127d8ac80271c59056d703830ab126",
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    "fragment_support.py": "bbfd8943563acccbb6b5ebda723d4c7cef44ef88a2dd508439cbae28cf52856f",
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    "joint_model.py": "c2279fd29e12f215e23fdd148fe7a6794b70fe8221d639c69c55e1ae6f87b5e4",
    "run_context_evidence.py": "3e99c6f7b95d4df77ae2598a59860caeb5adf059ce1be60f6a244053b0783d6a",
    "run_context_evidence_disk_v3.py": "779ad5b3833dbdfa074778515bb89dc789a857606204f378225ff888e4a94a9d",
    "run_context_inference.py": "3072b63da055bbd819ff57280e39431d2da611824059458336c0264062f3d6f5",
    "run_context_linear.py": "33ef894cf3a287ec3c52a32da50d50ea3c99f87446ce7c27144c5a6e573d2203",
    "score_native.py": "531340bcca991cd2fac6f563ae557a2882e9f75d5b3d4cd101161dc58a25eee2",
    "sequence_identity.py": "0152f515c50ce66f5dc58ad1442072b0093c247e4eca98949501d869a44cb721",
    "t1k_evidence.py": "b79c8cdf6708bf8f0401adb4a0aa9a73b8251da3543b5d6343382ac02a06b9b6",
    "test_context_inference.py": "2e2e6a2ae2ef5caa3bc2fff812656745f877b6b5100de6050f39babeb0c7ae89"
  },
  "script_sha256": "f1080946e5a29b4b384e0db73a18ca3c6398b41112779c240b85cc69a775285e",
  "native_table_sha256": "15f6f76576b94a4dc040ece7dc4d11e6fc7071ae3e0d69ac15384f90e5b33c39",
  "aliases_sha256": "5ddfe098780254d53dc48002be6e9fae86270ccdd4bfa0cde2a0942d6dc4543a",
  "job_id": "54049494",
  "graph_sequences_absent_from_native_catalogue": 0,
  "native_panel_aliases_retained": 495,
  "truth_loaded": false,
  "intervention": "Drop non-IPD-prefixed candidate placements before normalization; retain native panel aliases",
  "limitations": [
    "Existing original.fa/flanked reference configuration, not a full-genomic-IPD rebase.",
    "Tests incremental graph retrieval over native retrieval, not all possible graph algorithms.",
    "Candidate availability is held equal; retrieved candidates may differ by design.",
    "Same scorer, fallback and decision thresholds as original union replay."
  ],
  "retrieval_counts": {
    "fragments": 659293,
    "native_supported_fragments": 14859,
    "graph_supported_fragments": 14340,
    "graph_only_fragments": 3753
  },
  "status": "native_proposal_ablation_complete",
  "output_sha256": {
    "E1/calls.json": "6d78c0f6f034602d8333a7315f37f06b675eb8763fc035542fc1df966a3183d8",
    "E1/decisions.json": "c16dc3381a754ce8ba4100928ce30c7723c5892333e1821afec3248658ad73cb",
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    "E2/calls.json": "e99a8dd1b7061fa614c48f7185b0074453ad65ce22e757661c8946bcb76a2196",
    "E2/decisions.json": "33efe971e1f417e3a87ddbcb86455d03ed601ad45a13839192a83eb2f79ce010",
    "E2/sequence_calls.json": "c510d56af7cd0090b939bde75ff3d94c7ea4a6cf2d7074b81e6a70a41de9efc8",
    "E3/calls.json": "f0e7218dce966849f5652ba20b49b32e2bc1bea8dfbee736028824d70211cbf0",
    "E3/decisions.json": "45ab3ca7eab6de648033b1d069495a36058115e1110efe110dfc4458c385bc6c",
    "E3/sequence_calls.json": "161fa204376bed70f59154911a1fb410930a70cc24cffbc09639c67dff72df75"
  }
}