#!/bin/bash
#SBATCH --account=pi-hohndor
#SBATCH --partition=batch
#SBATCH --cpus-per-task=8
#SBATCH --mem=64G
#SBATCH --time=04:00:00
#SBATCH --array=0-119%8
set -euo pipefail
ROOT=/benchmark-runtime
BASE=$ROOT/hprc-zenodo-20261004/genomic-graph-rebase-20261020
cd "$BASE"
observed=$(sha256sum "$ROOT/containers/ubuntu24.sif")
[[ ${observed%% *} == 5d416c6d85b18c807bbf5d51fdccc41f104f32bd6657548cefd1203601e9e470 ]]
module load singularity/3.9.7
export SINGULARITYENV_SLURM_ARRAY_TASK_ID=$SLURM_ARRAY_TASK_ID
export SINGULARITYENV_SLURM_JOB_ID=$SLURM_JOB_ID SINGULARITYENV_SLURM_CPUS_PER_TASK=$SLURM_CPUS_PER_TASK
export SINGULARITYENV_PATH=/runtime/user/hla/mm/envs/asian50-spechla/bin:/usr/local/bin:/usr/bin:/bin
export SINGULARITYENV_PYTHONNOUSERSITE=1
exec singularity exec --cleanenv --no-home --pwd /benchmark/genomic-graph-rebase-20261020 --bind "$ROOT/hla:/runtime/user/hla,$ROOT/hprc-zenodo-20261004:/benchmark,/workspace:/workspace" "$ROOT/containers/ubuntu24.sif" /runtime/user/hla/mm/envs/asian50-spechla/bin/python3.12 /benchmark/genomic-graph-rebase-20261020/run.py